Contents
Index
bio-0.4.7: A bioinformatics library
A
B
C
D
E
F
G
H
I
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
!
?
Index - C
castSeq
Bio.Sequence.SeqData
castToAmino
Bio.Sequence.SeqData
,
Bio.Sequence
castToNuc
Bio.Sequence.SeqData
,
Bio.Sequence
charged
Bio.Sequence.AminoProperties
checkInvariants
1 (Function)
Bio.Location.LocMap
2 (Function)
Bio.GFF3.FeatureHier
children
1 (Function)
Bio.GFF3.FeatureHier
2 (Function)
Bio.GFF3.FeatureHierSequences
childrenM
Bio.GFF3.FeatureHier
Chr
Bio.Alignment.AlignData
chrom
Bio.Alignment.BED
chromEnd
Bio.Alignment.BED
chromosomes
Bio.GFF3.SGD
chromStart
Bio.Alignment.BED
clipFlows
Bio.Sequence.SFF_filters
clipSeq
Bio.Sequence.SFF_filters
clip_adapter_left
Bio.Sequence.SFF
clip_adapter_right
Bio.Sequence.SFF
clip_qual_left
Bio.Sequence.SFF
clip_qual_right
Bio.Sequence.SFF
Clustered
Bio.Clustering
cluster_sl
Bio.Clustering
columns
Bio.Alignment.AlignData
CommonHeader
1 (Type/Class)
Bio.Sequence.SFF
2 (Data Constructor)
Bio.Sequence.SFF
Comp
Bio.Sequence.GeneOntology
, Bio.Sequence.GOA
compact
Bio.Sequence.HashWord
compl
Bio.Sequence.SeqData
,
Bio.Sequence
complement
Bio.Sequence.HashWord
contig
Bio.Alignment.ACE
ContigLoc
1 (Type/Class)
Bio.Location.ContigLocation
2 (Data Constructor)
Bio.Location.ContigLocation
contigLoc
Bio.GFF3.Feature
contigous
Bio.Sequence.HashWord
,
Bio.Sequence
ContigSeqLoc
Bio.Location.SeqLocation
convert
Bio.Sequence.SFF
countIO
Bio.Util
countSeqs
Bio.Sequence.Fasta
Cys
Bio.Sequence.SeqData
,
Bio.Sequence