ViennaRNAParser-1.2.7: Libary for parsing ViennaRNA package output

Safe HaskellSafe
LanguageHaskell98

Bio.RNAzData

Description

This module contains a hierarchical data structure for RNAz output For more information on RNAz consult: http://www.tbi.univie.ac.at/~wash/RNAz/

Synopsis

Documentation

data RNAz Source

All elements of RNAz output are contained in this datatype

Constructors

RNAz 

Fields

version :: String
 
sequenceNumber :: Int
 
columnNumber :: Int
 
readingDirection :: String
 
meanPairwiseIdentity :: Double
 
shannonEntropy :: Double
 
gcContent :: Double
 
meanSingleSequenceMinimumFreeEnergy :: Double
 
consensusMinimumFreeEnergy :: Double
 
energyContribution :: Double
 
covarianceContribution :: Double
 
combinationsPair :: Double
 
meanZScore :: Double
 
structureConservationIndex :: Double
 
backgroundModel :: String
 
decisionModel :: String
 
svmDecisionValue :: Double
 
svmRNAClassProbability :: Double
 
prediction :: String
 
rnazResults :: [RNAzResult]
 
rnazConsensus :: RNAzConsensus
 

Instances

data RNAzResult Source

Datatype contains all result elements for each member of the input alignment

Constructors

RNAzResult 

Fields

header :: String
 
resultSequence :: String
 
dotBracket :: String
 
minimumFreeEnergy :: Double
 
zScore :: Double
 
zscoreCalculationApproach :: Char
 

Instances

data RNAzConsensus Source

Datatype contains all elements for the consenus result of input alignment

Constructors

RNAzConsensus 

Fields

consensusSequence :: String
 
consensusDotBracket :: String
 

Instances