ViennaRNAParser-1.2.7: Libary for parsing ViennaRNA package output

Safe HaskellSafe
LanguageHaskell98

Bio.RNAupData

Description

This module contains a data structure for RNAup output For more information on RNAup consult: http://www.tbi.univie.ac.at/RNA/RNAup.html

Synopsis

Documentation

data RNAupInteraction Source

Data structure for individual interaction between a target and query nucleic acid seqence, contains all (sub)-optimal interactions

Constructors

RNAupInteraction 

Fields

upQueryIdentifier :: String
 
upTargetIdentifier :: String
 
upInteractions :: [RNAupInteractionRegion]
 

Instances

data RNAupInteractionRegion Source

Data structure for (sub-) optimal interaction region

Constructors

RNAupInteractionRegion 

Fields

upSecondaryStructure :: String
 
upQueryDuplexBegin :: Int
 
upQueryDuplexEnd :: Int
 
upTargetDuplexBegin :: Int
 
upTargetDuplexEnd :: Int
 
upDuplexEnergy :: Double
 
upDuplexEnergyWithoutAccessiblity :: Maybe Double
 
upQueryAccessiblity :: Maybe Double
 
upTargetAccessibility :: Maybe Double
 
upQuerySequence :: String
 
upTargetSequence :: String
 
upOutputFileName :: Maybe String
 

Instances