ViennaRNAParser-1.0.1: Libary for parsing ViennaRNA package output

Index

alignmentConsensusDotBracketBio.ViennaRNAParser
alignmentConsensusEnergyCovarianceContributionsBio.ViennaRNAParser
alignmentConsensusInitialMinimumFreeEnergyBio.ViennaRNAParser
alignmentConsensusMinimumFreeEnergyBio.ViennaRNAParser
alignmentConsensusSequenceBio.ViennaRNAParser
backgroundModelBio.ViennaRNAParser
columnNumberBio.ViennaRNAParser
combinationsPairBio.ViennaRNAParser
consensusDotBracketBio.ViennaRNAParser
consensusMinimumFreeEnergyBio.ViennaRNAParser
consensusSequenceBio.ViennaRNAParser
covarianceContributionBio.ViennaRNAParser
decisionModelBio.ViennaRNAParser
dotBracketBio.ViennaRNAParser
duplexEnergyBio.ViennaRNAParser
duplexEnergyWithoutAccessiblityBio.ViennaRNAParser
energyContributionBio.ViennaRNAParser
foldingEnergyBio.ViennaRNAParser
foldSecondaryStructureBio.ViennaRNAParser
foldSequenceBio.ViennaRNAParser
gcContentBio.ViennaRNAParser
headerBio.ViennaRNAParser
meanPairwiseIdentityBio.ViennaRNAParser
meanSingleSequenceMinimumFreeEnergyBio.ViennaRNAParser
meanZScoreBio.ViennaRNAParser
minimumFreeEnergyBio.ViennaRNAParser
parseRNAalifoldBio.ViennaRNAParser
parseRNAdistanceBio.ViennaRNAParser
parseRNAfoldBio.ViennaRNAParser
parseRNAplexBio.ViennaRNAParser
parseRNAupBio.ViennaRNAParser
parseRNAzBio.ViennaRNAParser
plexSecondaryStructureBio.ViennaRNAParser
predictionBio.ViennaRNAParser
queryAccessiblityBio.ViennaRNAParser
queryDuplexBeginBio.ViennaRNAParser
queryDuplexEndBio.ViennaRNAParser
queryIdentifierBio.ViennaRNAParser
readingDirectionBio.ViennaRNAParser
readRNAalifoldBio.ViennaRNAParser
readRNAdistanceBio.ViennaRNAParser
readRNAfoldBio.ViennaRNAParser
readRNAplexBio.ViennaRNAParser
readRNAupBio.ViennaRNAParser
readRNAzBio.ViennaRNAParser
resultSequenceBio.ViennaRNAParser
RNAalifoldOutput 
1 (Type/Class)Bio.ViennaRNAParser
2 (Data Constructor)Bio.ViennaRNAParser
RNAdistance 
1 (Type/Class)Bio.ViennaRNAParser
2 (Data Constructor)Bio.ViennaRNAParser
RNAfold 
1 (Type/Class)Bio.ViennaRNAParser
2 (Data Constructor)Bio.ViennaRNAParser
RNAplexInteraction 
1 (Type/Class)Bio.ViennaRNAParser
2 (Data Constructor)Bio.ViennaRNAParser
RNAupInteraction 
1 (Type/Class)Bio.ViennaRNAParser
2 (Data Constructor)Bio.ViennaRNAParser
RNAupInteractionRegion 
1 (Type/Class)Bio.ViennaRNAParser
2 (Data Constructor)Bio.ViennaRNAParser
RNAzConsensus 
1 (Type/Class)Bio.ViennaRNAParser
2 (Data Constructor)Bio.ViennaRNAParser
rnazConsensusBio.ViennaRNAParser
RNAzOutput 
1 (Type/Class)Bio.ViennaRNAParser
2 (Data Constructor)Bio.ViennaRNAParser
RNAzResult 
1 (Type/Class)Bio.ViennaRNAParser
2 (Data Constructor)Bio.ViennaRNAParser
rnazResultsBio.ViennaRNAParser
secondaryStructureDistanceBio.ViennaRNAParser
sequenceIdentifierBio.ViennaRNAParser
sequenceNumberBio.ViennaRNAParser
shannonEntropyBio.ViennaRNAParser
structureConservationIndexBio.ViennaRNAParser
svmDecisionValueBio.ViennaRNAParser
svmRNAClassProbabilityBio.ViennaRNAParser
targetAccessibilityBio.ViennaRNAParser
targetDuplexBeginBio.ViennaRNAParser
targetDuplexEndBio.ViennaRNAParser
targetIdentifierBio.ViennaRNAParser
upDuplexEnergyBio.ViennaRNAParser
upDuplexEnergyWithoutAccessiblityBio.ViennaRNAParser
upInteractionsBio.ViennaRNAParser
upOutputFileNameBio.ViennaRNAParser
upQueryAccessiblityBio.ViennaRNAParser
upQueryDuplexBeginBio.ViennaRNAParser
upQueryDuplexEndBio.ViennaRNAParser
upQueryIdentifierBio.ViennaRNAParser
upQuerySequenceBio.ViennaRNAParser
upSecondaryStructureBio.ViennaRNAParser
upTargetAccessibilityBio.ViennaRNAParser
upTargetDuplexBeginBio.ViennaRNAParser
upTargetDuplexEndBio.ViennaRNAParser
upTargetIdentifierBio.ViennaRNAParser
upTargetSequenceBio.ViennaRNAParser
versionBio.ViennaRNAParser
zScoreBio.ViennaRNAParser
zscoreCalculationApproachBio.ViennaRNAParser