Contents
Index
ViennaRNAParser-1.0.1: Libary for parsing ViennaRNA package output
Index
alignmentConsensusDotBracket
Bio.ViennaRNAParser
alignmentConsensusEnergyCovarianceContributions
Bio.ViennaRNAParser
alignmentConsensusInitialMinimumFreeEnergy
Bio.ViennaRNAParser
alignmentConsensusMinimumFreeEnergy
Bio.ViennaRNAParser
alignmentConsensusSequence
Bio.ViennaRNAParser
backgroundModel
Bio.ViennaRNAParser
columnNumber
Bio.ViennaRNAParser
combinationsPair
Bio.ViennaRNAParser
consensusDotBracket
Bio.ViennaRNAParser
consensusMinimumFreeEnergy
Bio.ViennaRNAParser
consensusSequence
Bio.ViennaRNAParser
covarianceContribution
Bio.ViennaRNAParser
decisionModel
Bio.ViennaRNAParser
dotBracket
Bio.ViennaRNAParser
duplexEnergy
Bio.ViennaRNAParser
duplexEnergyWithoutAccessiblity
Bio.ViennaRNAParser
energyContribution
Bio.ViennaRNAParser
foldingEnergy
Bio.ViennaRNAParser
foldSecondaryStructure
Bio.ViennaRNAParser
foldSequence
Bio.ViennaRNAParser
gcContent
Bio.ViennaRNAParser
header
Bio.ViennaRNAParser
meanPairwiseIdentity
Bio.ViennaRNAParser
meanSingleSequenceMinimumFreeEnergy
Bio.ViennaRNAParser
meanZScore
Bio.ViennaRNAParser
minimumFreeEnergy
Bio.ViennaRNAParser
parseRNAalifold
Bio.ViennaRNAParser
parseRNAdistance
Bio.ViennaRNAParser
parseRNAfold
Bio.ViennaRNAParser
parseRNAplex
Bio.ViennaRNAParser
parseRNAup
Bio.ViennaRNAParser
parseRNAz
Bio.ViennaRNAParser
plexSecondaryStructure
Bio.ViennaRNAParser
prediction
Bio.ViennaRNAParser
queryAccessiblity
Bio.ViennaRNAParser
queryDuplexBegin
Bio.ViennaRNAParser
queryDuplexEnd
Bio.ViennaRNAParser
queryIdentifier
Bio.ViennaRNAParser
readingDirection
Bio.ViennaRNAParser
readRNAalifold
Bio.ViennaRNAParser
readRNAdistance
Bio.ViennaRNAParser
readRNAfold
Bio.ViennaRNAParser
readRNAplex
Bio.ViennaRNAParser
readRNAup
Bio.ViennaRNAParser
readRNAz
Bio.ViennaRNAParser
resultSequence
Bio.ViennaRNAParser
RNAalifoldOutput
1 (Type/Class)
Bio.ViennaRNAParser
2 (Data Constructor)
Bio.ViennaRNAParser
RNAdistance
1 (Type/Class)
Bio.ViennaRNAParser
2 (Data Constructor)
Bio.ViennaRNAParser
RNAfold
1 (Type/Class)
Bio.ViennaRNAParser
2 (Data Constructor)
Bio.ViennaRNAParser
RNAplexInteraction
1 (Type/Class)
Bio.ViennaRNAParser
2 (Data Constructor)
Bio.ViennaRNAParser
RNAupInteraction
1 (Type/Class)
Bio.ViennaRNAParser
2 (Data Constructor)
Bio.ViennaRNAParser
RNAupInteractionRegion
1 (Type/Class)
Bio.ViennaRNAParser
2 (Data Constructor)
Bio.ViennaRNAParser
RNAzConsensus
1 (Type/Class)
Bio.ViennaRNAParser
2 (Data Constructor)
Bio.ViennaRNAParser
rnazConsensus
Bio.ViennaRNAParser
RNAzOutput
1 (Type/Class)
Bio.ViennaRNAParser
2 (Data Constructor)
Bio.ViennaRNAParser
RNAzResult
1 (Type/Class)
Bio.ViennaRNAParser
2 (Data Constructor)
Bio.ViennaRNAParser
rnazResults
Bio.ViennaRNAParser
secondaryStructureDistance
Bio.ViennaRNAParser
sequenceIdentifier
Bio.ViennaRNAParser
sequenceNumber
Bio.ViennaRNAParser
shannonEntropy
Bio.ViennaRNAParser
structureConservationIndex
Bio.ViennaRNAParser
svmDecisionValue
Bio.ViennaRNAParser
svmRNAClassProbability
Bio.ViennaRNAParser
targetAccessibility
Bio.ViennaRNAParser
targetDuplexBegin
Bio.ViennaRNAParser
targetDuplexEnd
Bio.ViennaRNAParser
targetIdentifier
Bio.ViennaRNAParser
upDuplexEnergy
Bio.ViennaRNAParser
upDuplexEnergyWithoutAccessiblity
Bio.ViennaRNAParser
upInteractions
Bio.ViennaRNAParser
upOutputFileName
Bio.ViennaRNAParser
upQueryAccessiblity
Bio.ViennaRNAParser
upQueryDuplexBegin
Bio.ViennaRNAParser
upQueryDuplexEnd
Bio.ViennaRNAParser
upQueryIdentifier
Bio.ViennaRNAParser
upQuerySequence
Bio.ViennaRNAParser
upSecondaryStructure
Bio.ViennaRNAParser
upTargetAccessibility
Bio.ViennaRNAParser
upTargetDuplexBegin
Bio.ViennaRNAParser
upTargetDuplexEnd
Bio.ViennaRNAParser
upTargetIdentifier
Bio.ViennaRNAParser
upTargetSequence
Bio.ViennaRNAParser
version
Bio.ViennaRNAParser
zScore
Bio.ViennaRNAParser
zscoreCalculationApproach
Bio.ViennaRNAParser