Directory listing for ViennaRNA-bindings-0.233.1.1 source tarball
ViennaRNA-bindings-0.233.1.1/
- LICENSE
- README.md
- Setup.hs
- ViennaRNA-bindings.cabal
- changelog.md
- BioInf/
- C/
- ffiwrap_centroid.c
- ffiwrap_fold.c
- ffiwrap_part_func.c
- ViennaRNA/
- 2Dfold.c
- 2Dfold.h
- 2Dpfold.c
- 2Dpfold.h
- LPfold.c
- LPfold.h
- Lfold.c
- Lfold.h
- MEA.c
- MEA.h
- PKplex.h
- PS_dot.c
- PS_dot.h
- ProfileAln.c
- ProfileAln.h
- ProfileDist.c
- RNAstruct.c
- RNAstruct.h
- aliLfold.c
- ali_plex.c
- ali_plex.h
- alicircfold.inc
- alifold.c
- alifold.h
- alipfold.c
- aln_util.c
- aln_util.h
- alphabet.c
- alphabet.h
- boltzmann_sampling.c
- boltzmann_sampling.h
- c_plex.c
- centroid.c
- centroid.h
- circfold.inc
- cofold.c
- cofold.h
- color_output.inc
- commands.c
- commands.h
- constraints.c
- constraints.h
- constraints_SHAPE.c
- constraints_SHAPE.h
- constraints_hard.c
- constraints_hard.h
- constraints_ligand.c
- constraints_ligand.h
- constraints_soft.c
- constraints_soft.h
- convert_epars.c
- convert_epars.h
- data_structures.c
- data_structures.h
- dist_vars.c
- dist_vars.h
- dp_matrices.c
- dp_matrices.h
- duplex.c
- duplex.h
- edit_cost.h
- energy_const.h
- energy_par.c
- energy_par.h
- equilibrium_probs.c
- equilibrium_probs.h
- eval.c
- eval.h
- exterior_loops.c
- exterior_loops.h
- file_formats.c
- file_formats.h
- file_formats_msa.c
- file_formats_msa.h
- file_utils.c
- file_utils.h
- findpath.c
- findpath.h
- fold.c
- fold.h
- fold_vars.h
- gquad.c
- gquad.h
- grammar.h
- hairpin_loops.c
- hairpin_loops.h
- interior_loops.c
- interior_loops.h
- intl11.h
- intl11dH.h
- intl21.h
- intl21dH.h
- intl22.h
- intl22dH.h
- inverse.c
- inverse.h
- ligand.c
- ligand.h
- list.c
- list.h
- loop_energies.h
- mfe.c
- mfe.h
- mm.c
- mm.h
- model.c
- model.h
- model_avg.inc
- model_sd.inc
- move_set.c
- move_set.h
- multibranch_loops.c
- multibranch_loops.h
- naview.c
- naview.h
- pair_mat.h
- params.c
- params.h
- part_func.c
- part_func.h
- part_func_co.c
- part_func_co.h
- part_func_up.c
- part_func_up.h
- perturbation_fold.c
- perturbation_fold.h
- plex.c
- plex.h
- plex_functions.c
- plot_aln.c
- plot_aln.h
- plot_layouts.c
- plot_layouts.h
- plot_structure.c
- plot_structure.h
- profiledist.h
- read_epars.c
- read_epars.h
- ribo.c
- ribo.h
- snofold.c
- snofold.h
- snoop.c
- snoop.h
- string_utils.c
- string_utils.h
- stringdist.c
- stringdist.h
- structure_utils.c
- structure_utils.h
- structured_domains.h
- subopt.c
- subopt.h
- svm_utils.c
- svm_utils.h
- treedist.c
- treedist.h
- unstructured_domains.c
- unstructured_domains.h
- utils.c
- utils.h
- tests/