Safe Haskell	None
Language	Haskell2010

Biobase.RNAlien.RNAcentralHTTP

Description

Interface for the RNAcentral REST webservice.

Synopsis

rnaCentralHTTP :: String -> IO (Either String RNAcentralEntryResponse)
buildSequenceViaMD5Query :: Fasta () () -> String
buildStringViaMD5Query :: String -> String
getRNACentralEntries :: [String] -> IO [Either String RNAcentralEntryResponse]
showRNAcentralAlienEvaluation :: [Either String RNAcentralEntryResponse] -> String
data RNAcentralEntryResponse = RNAcentralEntryResponse {
- count :: Int
- next :: Maybe Text
- previous :: Maybe Text
- results :: [RNAcentralEntry]
}
data RNAcentralEntry = RNAcentralEntry {
- url :: Text
- rnacentral_id :: Text
- md5 :: Text
- sequence :: Text
- length :: Int
- xrefs :: Text
- publications :: Text
}

Documentation

rnaCentralHTTP :: String -> IO (Either String RNAcentralEntryResponse) Source #

Function for querying the RNAcentral REST interface.

buildSequenceViaMD5Query :: Fasta () () -> String Source #

Build a query from a input sequence

TODO [chzs] consider using strict bytestring as long as possible.

TODO [chzs] consider giving useful typelevel names to the types in Fasta. One may give a type-level name to the sequence identifier, and an identifier (like DNA) to the biosequence type.

buildStringViaMD5Query :: String -> String Source #

getRNACentralEntries :: [String] -> IO [Either String RNAcentralEntryResponse] Source #

showRNAcentralAlienEvaluation :: [Either String RNAcentralEntryResponse] -> String Source #

data RNAcentralEntryResponse Source #

Data structure for RNAcentral entry response

Constructors

RNAcentralEntryResponse
Fields count :: Int next :: Maybe Text previous :: Maybe Text results :: [RNAcentralEntry]

Instances

Eq RNAcentralEntryResponse Source #
Instance details Defined in Biobase.RNAlien.RNAcentralHTTP Methods (==) :: RNAcentralEntryResponse -> RNAcentralEntryResponse -> Bool # (/=) :: RNAcentralEntryResponse -> RNAcentralEntryResponse -> Bool #
Show RNAcentralEntryResponse Source #
Instance details Defined in Biobase.RNAlien.RNAcentralHTTP Methods showsPrec :: Int -> RNAcentralEntryResponse -> ShowS # show :: RNAcentralEntryResponse -> String # showList :: [RNAcentralEntryResponse] -> ShowS #
Generic RNAcentralEntryResponse Source #
Instance details Defined in Biobase.RNAlien.RNAcentralHTTP Associated Types type Rep RNAcentralEntryResponse :: Type -> Type # Methods from :: RNAcentralEntryResponse -> Rep RNAcentralEntryResponse x # to :: Rep RNAcentralEntryResponse x -> RNAcentralEntryResponse #
ToJSON RNAcentralEntryResponse Source #
Instance details Defined in Biobase.RNAlien.RNAcentralHTTP Methods toJSON :: RNAcentralEntryResponse -> Value # toEncoding :: RNAcentralEntryResponse -> Encoding # toJSONList :: [RNAcentralEntryResponse] -> Value # toEncodingList :: [RNAcentralEntryResponse] -> Encoding #
FromJSON RNAcentralEntryResponse Source #
Instance details Defined in Biobase.RNAlien.RNAcentralHTTP Methods parseJSON :: Value -> Parser RNAcentralEntryResponse # parseJSONList :: Value -> Parser [RNAcentralEntryResponse] #
type Rep RNAcentralEntryResponse Source #
Instance details Defined in Biobase.RNAlien.RNAcentralHTTP type Rep RNAcentralEntryResponse = D1 (MetaData "RNAcentralEntryResponse" "Biobase.RNAlien.RNAcentralHTTP" "RNAlien-1.6.0-EaDMQmhh3aCAzgb3dODI60" False) (C1 (MetaCons "RNAcentralEntryResponse" PrefixI True) ((S1 (MetaSel (Just "count") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Int) :: S1 (MetaSel (Just "next") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe Text))) :: (S1 (MetaSel (Just "previous") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe Text)) :*: S1 (MetaSel (Just "results") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 [RNAcentralEntry]))))

data RNAcentralEntry Source #

Constructors

RNAcentralEntry
Fields url :: Text rnacentral_id :: Text md5 :: Text sequence :: Text length :: Int xrefs :: Text publications :: Text

Instances

Eq RNAcentralEntry Source #
Instance details Defined in Biobase.RNAlien.RNAcentralHTTP Methods (==) :: RNAcentralEntry -> RNAcentralEntry -> Bool # (/=) :: RNAcentralEntry -> RNAcentralEntry -> Bool #
Show RNAcentralEntry Source #
Instance details Defined in Biobase.RNAlien.RNAcentralHTTP Methods showsPrec :: Int -> RNAcentralEntry -> ShowS # show :: RNAcentralEntry -> String # showList :: [RNAcentralEntry] -> ShowS #
Generic RNAcentralEntry Source #
Instance details Defined in Biobase.RNAlien.RNAcentralHTTP Associated Types type Rep RNAcentralEntry :: Type -> Type # Methods from :: RNAcentralEntry -> Rep RNAcentralEntry x # to :: Rep RNAcentralEntry x -> RNAcentralEntry #
ToJSON RNAcentralEntry Source #
Instance details Defined in Biobase.RNAlien.RNAcentralHTTP Methods toJSON :: RNAcentralEntry -> Value # toEncoding :: RNAcentralEntry -> Encoding # toJSONList :: [RNAcentralEntry] -> Value # toEncodingList :: [RNAcentralEntry] -> Encoding #
FromJSON RNAcentralEntry Source #
Instance details Defined in Biobase.RNAlien.RNAcentralHTTP Methods parseJSON :: Value -> Parser RNAcentralEntry # parseJSONList :: Value -> Parser [RNAcentralEntry] #
type Rep RNAcentralEntry Source #
Instance details Defined in Biobase.RNAlien.RNAcentralHTTP type Rep RNAcentralEntry = D1 (MetaData "RNAcentralEntry" "Biobase.RNAlien.RNAcentralHTTP" "RNAlien-1.6.0-EaDMQmhh3aCAzgb3dODI60" False) (C1 (MetaCons "RNAcentralEntry" PrefixI True) ((S1 (MetaSel (Just "url") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Text) :: (S1 (MetaSel (Just "rnacentral_id") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Text) :: S1 (MetaSel (Just "md5") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Text))) :: ((S1 (MetaSel (Just "sequence") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Text) :: S1 (MetaSel (Just "length") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Int)) :: (S1 (MetaSel (Just "xrefs") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Text) :: S1 (MetaSel (Just "publications") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Text)))))