Safe Haskell | None |
---|---|
Language | Haskell2010 |
This module contains data structures for the Clustal tools For more information on Clustal tools consult: http://www.clustal.org/
Synopsis
- data ClustalSummary = ClustalSummary {}
- data SequenceParameters = SequenceParameters {}
- data PairwiseAlignmentSummary = PairwiseAlignmentSummary {}
- data GroupSummary = GroupSummary {}
- data ClustalAlignment = ClustalAlignment {}
- showAlignment :: Int -> Int -> Int -> [ClustalAlignmentEntry] -> Text -> String
- showAlignmentBlock :: Int -> Int -> [ClustalAlignmentEntry] -> Text -> String
- showAlignmentLine :: Int -> Int -> ClustalAlignmentEntry -> String
- data ClustalAlignmentEntry = ClustalAlignmentEntry {}
- data ClustalAlignmentSlice = ClustalAlignmentSlice {}
- data ClustalAlignmentEntrySlice = ClustalAlignmentEntrySlice {}
- data StructuralClustalAlignment = StructuralClustalAlignment {}
- data StructuralClustalAlignmentEntrySlice = StructuralClustalAlignmentEntrySlice {}
Documentation
data ClustalSummary Source #
Data type for clustal summary, containing information about the alignment process, usually printed to STDOUT
Instances
Eq ClustalSummary Source # | |
Defined in Biobase.Clustal.Types (==) :: ClustalSummary -> ClustalSummary -> Bool # (/=) :: ClustalSummary -> ClustalSummary -> Bool # | |
Show ClustalSummary Source # | |
Defined in Biobase.Clustal.Types showsPrec :: Int -> ClustalSummary -> ShowS # show :: ClustalSummary -> String # showList :: [ClustalSummary] -> ShowS # |
data SequenceParameters Source #
Instances
Eq SequenceParameters Source # | |
Defined in Biobase.Clustal.Types (==) :: SequenceParameters -> SequenceParameters -> Bool # (/=) :: SequenceParameters -> SequenceParameters -> Bool # | |
Show SequenceParameters Source # | |
Defined in Biobase.Clustal.Types showsPrec :: Int -> SequenceParameters -> ShowS # show :: SequenceParameters -> String # showList :: [SequenceParameters] -> ShowS # |
data PairwiseAlignmentSummary Source #
Instances
Eq PairwiseAlignmentSummary Source # | |
Defined in Biobase.Clustal.Types | |
Show PairwiseAlignmentSummary Source # | |
Defined in Biobase.Clustal.Types showsPrec :: Int -> PairwiseAlignmentSummary -> ShowS # show :: PairwiseAlignmentSummary -> String # showList :: [PairwiseAlignmentSummary] -> ShowS # |
data GroupSummary Source #
Instances
Eq GroupSummary Source # | |
Defined in Biobase.Clustal.Types (==) :: GroupSummary -> GroupSummary -> Bool # (/=) :: GroupSummary -> GroupSummary -> Bool # | |
Show GroupSummary Source # | |
Defined in Biobase.Clustal.Types showsPrec :: Int -> GroupSummary -> ShowS # show :: GroupSummary -> String # showList :: [GroupSummary] -> ShowS # |
data ClustalAlignment Source #
Data structure for Clustal alignment format
Instances
Eq ClustalAlignment Source # | |
Defined in Biobase.Clustal.Types (==) :: ClustalAlignment -> ClustalAlignment -> Bool # (/=) :: ClustalAlignment -> ClustalAlignment -> Bool # | |
Show ClustalAlignment Source # | |
Defined in Biobase.Clustal.Types showsPrec :: Int -> ClustalAlignment -> ShowS # show :: ClustalAlignment -> String # showList :: [ClustalAlignment] -> ShowS # |
showAlignment :: Int -> Int -> Int -> [ClustalAlignmentEntry] -> Text -> String Source #
showAlignmentBlock :: Int -> Int -> [ClustalAlignmentEntry] -> Text -> String Source #
showAlignmentLine :: Int -> Int -> ClustalAlignmentEntry -> String Source #
data ClustalAlignmentEntry Source #
Instances
Eq ClustalAlignmentEntry Source # | |
Defined in Biobase.Clustal.Types (==) :: ClustalAlignmentEntry -> ClustalAlignmentEntry -> Bool # (/=) :: ClustalAlignmentEntry -> ClustalAlignmentEntry -> Bool # | |
Show ClustalAlignmentEntry Source # | |
Defined in Biobase.Clustal.Types showsPrec :: Int -> ClustalAlignmentEntry -> ShowS # show :: ClustalAlignmentEntry -> String # showList :: [ClustalAlignmentEntry] -> ShowS # |
data ClustalAlignmentSlice Source #
Instances
Eq ClustalAlignmentSlice Source # | |
Defined in Biobase.Clustal.Types (==) :: ClustalAlignmentSlice -> ClustalAlignmentSlice -> Bool # (/=) :: ClustalAlignmentSlice -> ClustalAlignmentSlice -> Bool # | |
Show ClustalAlignmentSlice Source # | |
Defined in Biobase.Clustal.Types showsPrec :: Int -> ClustalAlignmentSlice -> ShowS # show :: ClustalAlignmentSlice -> String # showList :: [ClustalAlignmentSlice] -> ShowS # |
data ClustalAlignmentEntrySlice Source #
Instances
Eq ClustalAlignmentEntrySlice Source # | |
Defined in Biobase.Clustal.Types | |
Show ClustalAlignmentEntrySlice Source # | |
Defined in Biobase.Clustal.Types showsPrec :: Int -> ClustalAlignmentEntrySlice -> ShowS # show :: ClustalAlignmentEntrySlice -> String # showList :: [ClustalAlignmentEntrySlice] -> ShowS # |
data StructuralClustalAlignment Source #
Data structure for structural Clustal alignment format
Instances
Eq StructuralClustalAlignment Source # | |
Defined in Biobase.Clustal.Types | |
Show StructuralClustalAlignment Source # | |
Defined in Biobase.Clustal.Types showsPrec :: Int -> StructuralClustalAlignment -> ShowS # show :: StructuralClustalAlignment -> String # showList :: [StructuralClustalAlignment] -> ShowS # |