Safe Haskell	None
Language	Haskell2010

Biobase.Types.AminoAcidSequence

Description

Encode the allowed amino acids in a better way.

Synopsis

newtype AAseq = AAseq {
- _aaseq :: ByteString
}
aaseq :: Iso' AAseq ByteString
mkAAseq :: ByteString -> AAseq

Documentation

newtype AAseq Source #

A short amino acid suquence.

It is an instance of Ixed to allow RNAseq (BS.pack "cag") ^? ix 2 == Just g.

Constructors

AAseq
Fields _aaseq :: ByteString

Instances

Eq AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence Methods (==) :: AAseq -> AAseq -> Bool # (/=) :: AAseq -> AAseq -> Bool #
Data AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> AAseq -> c AAseq # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c AAseq # toConstr :: AAseq -> Constr # dataTypeOf :: AAseq -> DataType # dataCast1 :: Typeable t => (forall d. Data d => c (t d)) -> Maybe (c AAseq) # dataCast2 :: Typeable t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c AAseq) # gmapT :: (forall b. Data b => b -> b) -> AAseq -> AAseq # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> AAseq -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> AAseq -> r # gmapQ :: (forall d. Data d => d -> u) -> AAseq -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> AAseq -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> AAseq -> m AAseq # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> AAseq -> m AAseq # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> AAseq -> m AAseq #
Ord AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence Methods compare :: AAseq -> AAseq -> Ordering # (<) :: AAseq -> AAseq -> Bool # (<=) :: AAseq -> AAseq -> Bool # (>) :: AAseq -> AAseq -> Bool # (>=) :: AAseq -> AAseq -> Bool # max :: AAseq -> AAseq -> AAseq # min :: AAseq -> AAseq -> AAseq #
Read AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence Methods readsPrec :: Int -> ReadS AAseq # readList :: ReadS [AAseq] # readPrec :: ReadPrec AAseq # readListPrec :: ReadPrec [AAseq] #
Show AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence Methods showsPrec :: Int -> AAseq -> ShowS # show :: AAseq -> String # showList :: [AAseq] -> ShowS #
IsString AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence Methods fromString :: String -> AAseq #
Generic AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence Associated Types type Rep AAseq :: Type -> Type # Methods from :: AAseq -> Rep AAseq x # to :: Rep AAseq x -> AAseq #
Arbitrary AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence Methods arbitrary :: Gen AAseq # shrink :: AAseq -> [AAseq] #
NFData AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence Methods rnf :: AAseq -> () #
Ixed AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence Methods ix :: Index AAseq -> Traversal' AAseq (IxValue AAseq) #
Reversing AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence Methods reversing :: AAseq -> AAseq #
type Rep AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence type Rep AAseq = D1 (MetaData "AAseq" "Biobase.Types.AminoAcidSequence" "BiobaseTypes-0.1.4.0-2SJmLmHyrafG90Dl3d2I5j" True) (C1 (MetaCons "AAseq" PrefixI True) (S1 (MetaSel (Just "_aaseq") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 ByteString)))
type Index AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence type Index AAseq = Int
type IxValue AAseq Source #
Instance details Defined in Biobase.Types.AminoAcidSequence type IxValue AAseq = Char

aaseq :: Iso' AAseq ByteString Source #

mkAAseq :: ByteString -> AAseq Source #