Safe Haskell	None
Language	Haskell2010

Biobase.Types.Odds

Description

Discretized log-odds.

Synopsis

Documentation

newtype DLO Source #

Discretized log-odds.

The BLOSUM matrices, for example, store data in discretized log-odds form.

TODO Might move up even higher into statistics modules.

Constructors

DLO
Fields getDLO :: Int

Instances

Eq DLO Source #
Methods (==) :: DLO -> DLO -> Bool # (/=) :: DLO -> DLO -> Bool #
Ord DLO Source #
Methods compare :: DLO -> DLO -> Ordering # (<) :: DLO -> DLO -> Bool # (<=) :: DLO -> DLO -> Bool # (>) :: DLO -> DLO -> Bool # (>=) :: DLO -> DLO -> Bool # max :: DLO -> DLO -> DLO # min :: DLO -> DLO -> DLO #
Read DLO Source #
Methods readsPrec :: Int -> ReadS DLO # readList :: ReadS [DLO] # readPrec :: ReadPrec DLO # readListPrec :: ReadPrec [DLO] #
Show DLO Source #
Methods showsPrec :: Int -> DLO -> ShowS # show :: DLO -> String # showList :: [DLO] -> ShowS #
Generic DLO Source #
Associated Types type Rep DLO :: * -> * # Methods from :: DLO -> Rep DLO x # to :: Rep DLO x -> DLO #
Hashable DLO Source #
Methods hashWithSalt :: Int -> DLO -> Int # hash :: DLO -> Int #
ToJSON DLO Source #
Methods toJSON :: DLO -> Value # toEncoding :: DLO -> Encoding # toJSONList :: [DLO] -> Value # toEncodingList :: [DLO] -> Encoding #
FromJSON DLO Source #
Methods parseJSON :: Value -> Parser DLO # parseJSONList :: Value -> Parser [DLO] #
Binary DLO Source #
Methods put :: DLO -> Put # get :: Get DLO # putList :: [DLO] -> Put #
Serialize DLO Source #
Methods put :: Putter DLO # get :: Get DLO #
NFData DLO Source #
Methods rnf :: DLO -> () #
Unbox DLO Source #

Vector Vector DLO Source #
Methods basicUnsafeFreeze :: PrimMonad m => Mutable Vector (PrimState m) DLO -> m (Vector DLO) # basicUnsafeThaw :: PrimMonad m => Vector DLO -> m (Mutable Vector (PrimState m) DLO) # basicLength :: Vector DLO -> Int # basicUnsafeSlice :: Int -> Int -> Vector DLO -> Vector DLO # basicUnsafeIndexM :: Monad m => Vector DLO -> Int -> m DLO # basicUnsafeCopy :: PrimMonad m => Mutable Vector (PrimState m) DLO -> Vector DLO -> m () # elemseq :: Vector DLO -> DLO -> b -> b #
MVector MVector DLO Source #
Methods basicLength :: MVector s DLO -> Int # basicUnsafeSlice :: Int -> Int -> MVector s DLO -> MVector s DLO # basicOverlaps :: MVector s DLO -> MVector s DLO -> Bool # basicUnsafeNew :: PrimMonad m => Int -> m (MVector (PrimState m) DLO) # basicInitialize :: PrimMonad m => MVector (PrimState m) DLO -> m () # basicUnsafeReplicate :: PrimMonad m => Int -> DLO -> m (MVector (PrimState m) DLO) # basicUnsafeRead :: PrimMonad m => MVector (PrimState m) DLO -> Int -> m DLO # basicUnsafeWrite :: PrimMonad m => MVector (PrimState m) DLO -> Int -> DLO -> m () # basicClear :: PrimMonad m => MVector (PrimState m) DLO -> m () # basicSet :: PrimMonad m => MVector (PrimState m) DLO -> DLO -> m () # basicUnsafeCopy :: PrimMonad m => MVector (PrimState m) DLO -> MVector (PrimState m) DLO -> m () # basicUnsafeMove :: PrimMonad m => MVector (PrimState m) DLO -> MVector (PrimState m) DLO -> m () # basicUnsafeGrow :: PrimMonad m => MVector (PrimState m) DLO -> Int -> m (MVector (PrimState m) DLO) #
type Rep DLO Source #
type Rep DLO = D1 (MetaData "DLO" "Biobase.Types.Odds" "BiobaseTypes-0.1.2.1-1LTYzU1e5OWItpBBqXiV1g" True) (C1 (MetaCons "DLO" PrefixI True) (S1 (MetaSel (Just Symbol "getDLO") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Int)))
data Vector DLO Source #
data Vector DLO = V_DLO (Vector Int)
data MVector s DLO Source #
data MVector s DLO = MV_DLO (MVector s Int)