Safe Haskell	None
Language	Haskell2010

Biobase.Types.Energy

Description

Different types of energies and conversion between.

TODO enthalpy TODO entropy

Synopsis

Documentation

newtype DeltaGibbs Source #

Gibbs free energy change.

For RNA structure, the change in energy from the unfolded structure to the given structure.

In units of kcal / mol.

TODO shall we phantom-type the actual units?

Constructors

DG
Fields getDG :: Double

Instances

Eq DeltaGibbs Source #
Methods (==) :: DeltaGibbs -> DeltaGibbs -> Bool # (/=) :: DeltaGibbs -> DeltaGibbs -> Bool #
Fractional DeltaGibbs Source #
Methods (/) :: DeltaGibbs -> DeltaGibbs -> DeltaGibbs # recip :: DeltaGibbs -> DeltaGibbs # fromRational :: Rational -> DeltaGibbs #
Num DeltaGibbs Source #
Methods (+) :: DeltaGibbs -> DeltaGibbs -> DeltaGibbs # (-) :: DeltaGibbs -> DeltaGibbs -> DeltaGibbs # (*) :: DeltaGibbs -> DeltaGibbs -> DeltaGibbs # negate :: DeltaGibbs -> DeltaGibbs # abs :: DeltaGibbs -> DeltaGibbs # signum :: DeltaGibbs -> DeltaGibbs # fromInteger :: Integer -> DeltaGibbs #
Ord DeltaGibbs Source #
Methods compare :: DeltaGibbs -> DeltaGibbs -> Ordering # (<) :: DeltaGibbs -> DeltaGibbs -> Bool # (<=) :: DeltaGibbs -> DeltaGibbs -> Bool # (>) :: DeltaGibbs -> DeltaGibbs -> Bool # (>=) :: DeltaGibbs -> DeltaGibbs -> Bool # max :: DeltaGibbs -> DeltaGibbs -> DeltaGibbs # min :: DeltaGibbs -> DeltaGibbs -> DeltaGibbs #
Read DeltaGibbs Source #
Methods readsPrec :: Int -> ReadS DeltaGibbs # readList :: ReadS [DeltaGibbs] # readPrec :: ReadPrec DeltaGibbs # readListPrec :: ReadPrec [DeltaGibbs] #
Show DeltaGibbs Source #
Methods showsPrec :: Int -> DeltaGibbs -> ShowS # show :: DeltaGibbs -> String # showList :: [DeltaGibbs] -> ShowS #
Generic DeltaGibbs Source #
Associated Types type Rep DeltaGibbs :: * -> * # Methods from :: DeltaGibbs -> Rep DeltaGibbs x # to :: Rep DeltaGibbs x -> DeltaGibbs #
Hashable DeltaGibbs Source #
Methods hashWithSalt :: Int -> DeltaGibbs -> Int # hash :: DeltaGibbs -> Int #
ToJSON DeltaGibbs Source #
Methods toJSON :: DeltaGibbs -> Value # toEncoding :: DeltaGibbs -> Encoding # toJSONList :: [DeltaGibbs] -> Value # toEncodingList :: [DeltaGibbs] -> Encoding #
FromJSON DeltaGibbs Source #
Methods parseJSON :: Value -> Parser DeltaGibbs # parseJSONList :: Value -> Parser [DeltaGibbs] #
Binary DeltaGibbs Source #
Methods put :: DeltaGibbs -> Put # get :: Get DeltaGibbs # putList :: [DeltaGibbs] -> Put #
Serialize DeltaGibbs Source #
Methods put :: Putter DeltaGibbs # get :: Get DeltaGibbs #
Default DeltaGibbs Source #
Methods def :: DeltaGibbs #
NFData DeltaGibbs Source #
Methods rnf :: DeltaGibbs -> () #
Unbox DeltaGibbs Source #

NumericalEpsilon DeltaGibbs Source #
Methods epsilon :: DeltaGibbs Source #
NumericalExtremes DeltaGibbs Source #
Methods maxFinite :: DeltaGibbs Source # minFinite :: DeltaGibbs Source # maxExtreme :: DeltaGibbs Source # minExtreme :: DeltaGibbs Source # maxLarge :: DeltaGibbs Source # minLarge :: DeltaGibbs Source #
Vector Vector DeltaGibbs Source #
Methods basicUnsafeFreeze :: PrimMonad m => Mutable Vector (PrimState m) DeltaGibbs -> m (Vector DeltaGibbs) # basicUnsafeThaw :: PrimMonad m => Vector DeltaGibbs -> m (Mutable Vector (PrimState m) DeltaGibbs) # basicLength :: Vector DeltaGibbs -> Int # basicUnsafeSlice :: Int -> Int -> Vector DeltaGibbs -> Vector DeltaGibbs # basicUnsafeIndexM :: Monad m => Vector DeltaGibbs -> Int -> m DeltaGibbs # basicUnsafeCopy :: PrimMonad m => Mutable Vector (PrimState m) DeltaGibbs -> Vector DeltaGibbs -> m () # elemseq :: Vector DeltaGibbs -> DeltaGibbs -> b -> b #
MVector MVector DeltaGibbs Source #
Methods basicLength :: MVector s DeltaGibbs -> Int # basicUnsafeSlice :: Int -> Int -> MVector s DeltaGibbs -> MVector s DeltaGibbs # basicOverlaps :: MVector s DeltaGibbs -> MVector s DeltaGibbs -> Bool # basicUnsafeNew :: PrimMonad m => Int -> m (MVector (PrimState m) DeltaGibbs) # basicInitialize :: PrimMonad m => MVector (PrimState m) DeltaGibbs -> m () # basicUnsafeReplicate :: PrimMonad m => Int -> DeltaGibbs -> m (MVector (PrimState m) DeltaGibbs) # basicUnsafeRead :: PrimMonad m => MVector (PrimState m) DeltaGibbs -> Int -> m DeltaGibbs # basicUnsafeWrite :: PrimMonad m => MVector (PrimState m) DeltaGibbs -> Int -> DeltaGibbs -> m () # basicClear :: PrimMonad m => MVector (PrimState m) DeltaGibbs -> m () # basicSet :: PrimMonad m => MVector (PrimState m) DeltaGibbs -> DeltaGibbs -> m () # basicUnsafeCopy :: PrimMonad m => MVector (PrimState m) DeltaGibbs -> MVector (PrimState m) DeltaGibbs -> m () # basicUnsafeMove :: PrimMonad m => MVector (PrimState m) DeltaGibbs -> MVector (PrimState m) DeltaGibbs -> m () # basicUnsafeGrow :: PrimMonad m => MVector (PrimState m) DeltaGibbs -> Int -> m (MVector (PrimState m) DeltaGibbs) #
type Rep DeltaGibbs Source #
type Rep DeltaGibbs = D1 (MetaData "DeltaGibbs" "Biobase.Types.Energy" "BiobaseTypes-0.1.2.1-1LTYzU1e5OWItpBBqXiV1g" True) (C1 (MetaCons "DG" PrefixI True) (S1 (MetaSel (Just Symbol "getDG") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Double)))
data Vector DeltaGibbs Source #
data Vector DeltaGibbs = V_DeltaGibbs (Vector Double)
data MVector s DeltaGibbs Source #
data MVector s DeltaGibbs = MV_DeltaGibbs (MVector s Double)

newtype DeltaDekaGibbs Source #

round $ DeltaGibbs / 100.

Constructors

DekaG
Fields getDekaG :: Int

Instances

Eq DeltaDekaGibbs Source #
Methods (==) :: DeltaDekaGibbs -> DeltaDekaGibbs -> Bool # (/=) :: DeltaDekaGibbs -> DeltaDekaGibbs -> Bool #
Num DeltaDekaGibbs Source #
Methods (+) :: DeltaDekaGibbs -> DeltaDekaGibbs -> DeltaDekaGibbs # (-) :: DeltaDekaGibbs -> DeltaDekaGibbs -> DeltaDekaGibbs # (*) :: DeltaDekaGibbs -> DeltaDekaGibbs -> DeltaDekaGibbs # negate :: DeltaDekaGibbs -> DeltaDekaGibbs # abs :: DeltaDekaGibbs -> DeltaDekaGibbs # signum :: DeltaDekaGibbs -> DeltaDekaGibbs # fromInteger :: Integer -> DeltaDekaGibbs #
Ord DeltaDekaGibbs Source #
Methods compare :: DeltaDekaGibbs -> DeltaDekaGibbs -> Ordering # (<) :: DeltaDekaGibbs -> DeltaDekaGibbs -> Bool # (<=) :: DeltaDekaGibbs -> DeltaDekaGibbs -> Bool # (>) :: DeltaDekaGibbs -> DeltaDekaGibbs -> Bool # (>=) :: DeltaDekaGibbs -> DeltaDekaGibbs -> Bool # max :: DeltaDekaGibbs -> DeltaDekaGibbs -> DeltaDekaGibbs # min :: DeltaDekaGibbs -> DeltaDekaGibbs -> DeltaDekaGibbs #
Read DeltaDekaGibbs Source #
Methods readsPrec :: Int -> ReadS DeltaDekaGibbs # readList :: ReadS [DeltaDekaGibbs] # readPrec :: ReadPrec DeltaDekaGibbs # readListPrec :: ReadPrec [DeltaDekaGibbs] #
Show DeltaDekaGibbs Source #
Methods showsPrec :: Int -> DeltaDekaGibbs -> ShowS # show :: DeltaDekaGibbs -> String # showList :: [DeltaDekaGibbs] -> ShowS #
Generic DeltaDekaGibbs Source #
Associated Types type Rep DeltaDekaGibbs :: * -> * # Methods from :: DeltaDekaGibbs -> Rep DeltaDekaGibbs x # to :: Rep DeltaDekaGibbs x -> DeltaDekaGibbs #
Hashable DeltaDekaGibbs Source #
Methods hashWithSalt :: Int -> DeltaDekaGibbs -> Int # hash :: DeltaDekaGibbs -> Int #
ToJSON DeltaDekaGibbs Source #
Methods toJSON :: DeltaDekaGibbs -> Value # toEncoding :: DeltaDekaGibbs -> Encoding # toJSONList :: [DeltaDekaGibbs] -> Value # toEncodingList :: [DeltaDekaGibbs] -> Encoding #
FromJSON DeltaDekaGibbs Source #
Methods parseJSON :: Value -> Parser DeltaDekaGibbs # parseJSONList :: Value -> Parser [DeltaDekaGibbs] #
Binary DeltaDekaGibbs Source #
Methods put :: DeltaDekaGibbs -> Put # get :: Get DeltaDekaGibbs # putList :: [DeltaDekaGibbs] -> Put #
Serialize DeltaDekaGibbs Source #
Methods put :: Putter DeltaDekaGibbs # get :: Get DeltaDekaGibbs #
Default DeltaDekaGibbs Source #
Methods def :: DeltaDekaGibbs #
NFData DeltaDekaGibbs Source #
Methods rnf :: DeltaDekaGibbs -> () #
Unbox DeltaDekaGibbs Source #

NumericalExtremes DeltaDekaGibbs Source #
Methods maxFinite :: DeltaDekaGibbs Source # minFinite :: DeltaDekaGibbs Source # maxExtreme :: DeltaDekaGibbs Source # minExtreme :: DeltaDekaGibbs Source # maxLarge :: DeltaDekaGibbs Source # minLarge :: DeltaDekaGibbs Source #
Vector Vector DeltaDekaGibbs Source #
Methods basicUnsafeFreeze :: PrimMonad m => Mutable Vector (PrimState m) DeltaDekaGibbs -> m (Vector DeltaDekaGibbs) # basicUnsafeThaw :: PrimMonad m => Vector DeltaDekaGibbs -> m (Mutable Vector (PrimState m) DeltaDekaGibbs) # basicLength :: Vector DeltaDekaGibbs -> Int # basicUnsafeSlice :: Int -> Int -> Vector DeltaDekaGibbs -> Vector DeltaDekaGibbs # basicUnsafeIndexM :: Monad m => Vector DeltaDekaGibbs -> Int -> m DeltaDekaGibbs # basicUnsafeCopy :: PrimMonad m => Mutable Vector (PrimState m) DeltaDekaGibbs -> Vector DeltaDekaGibbs -> m () # elemseq :: Vector DeltaDekaGibbs -> DeltaDekaGibbs -> b -> b #
MVector MVector DeltaDekaGibbs Source #
Methods basicLength :: MVector s DeltaDekaGibbs -> Int # basicUnsafeSlice :: Int -> Int -> MVector s DeltaDekaGibbs -> MVector s DeltaDekaGibbs # basicOverlaps :: MVector s DeltaDekaGibbs -> MVector s DeltaDekaGibbs -> Bool # basicUnsafeNew :: PrimMonad m => Int -> m (MVector (PrimState m) DeltaDekaGibbs) # basicInitialize :: PrimMonad m => MVector (PrimState m) DeltaDekaGibbs -> m () # basicUnsafeReplicate :: PrimMonad m => Int -> DeltaDekaGibbs -> m (MVector (PrimState m) DeltaDekaGibbs) # basicUnsafeRead :: PrimMonad m => MVector (PrimState m) DeltaDekaGibbs -> Int -> m DeltaDekaGibbs # basicUnsafeWrite :: PrimMonad m => MVector (PrimState m) DeltaDekaGibbs -> Int -> DeltaDekaGibbs -> m () # basicClear :: PrimMonad m => MVector (PrimState m) DeltaDekaGibbs -> m () # basicSet :: PrimMonad m => MVector (PrimState m) DeltaDekaGibbs -> DeltaDekaGibbs -> m () # basicUnsafeCopy :: PrimMonad m => MVector (PrimState m) DeltaDekaGibbs -> MVector (PrimState m) DeltaDekaGibbs -> m () # basicUnsafeMove :: PrimMonad m => MVector (PrimState m) DeltaDekaGibbs -> MVector (PrimState m) DeltaDekaGibbs -> m () # basicUnsafeGrow :: PrimMonad m => MVector (PrimState m) DeltaDekaGibbs -> Int -> m (MVector (PrimState m) DeltaDekaGibbs) #
type Rep DeltaDekaGibbs Source #
type Rep DeltaDekaGibbs = D1 (MetaData "DeltaDekaGibbs" "Biobase.Types.Energy" "BiobaseTypes-0.1.2.1-1LTYzU1e5OWItpBBqXiV1g" True) (C1 (MetaCons "DekaG" PrefixI True) (S1 (MetaSel (Just Symbol "getDekaG") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Int)))
data Vector DeltaDekaGibbs Source #
data Vector DeltaDekaGibbs = V_DeltaDekaGibbs (Vector Int)
data MVector s DeltaDekaGibbs Source #
data MVector s DeltaDekaGibbs = MV_DeltaDekaGibbs (MVector s Int)