| Safe Haskell | None |
|---|---|
| Language | Haskell2010 |
Biobase.SubstMatrix.Import
Description
Import PAM/BLOSUM substituion matrices.
Synopsis
- fromByteString :: (MonadError String m, Real (Discretized k)) => ByteString -> m (AASubstMat t (DiscLogOdds k) a b)
- fromFile :: (MonadIO m, MonadError String m, Real (Discretized k)) => FilePath -> m (AASubstMat t (DiscLogOdds k) a b)
Documentation
fromByteString :: (MonadError String m, Real (Discretized k)) => ByteString -> m (AASubstMat t (DiscLogOdds k) a b) Source #
Import substituion matrix from a bytestring.
TODO the parser is fragile, since it uses read. This should be fixed.
fromFile :: (MonadIO m, MonadError String m, Real (Discretized k)) => FilePath -> m (AASubstMat t (DiscLogOdds k) a b) Source #
Import substitution matrix from file.