BiobaseBlast-0.2.0.0: BLAST-related tools

Safe Haskell	None
Language	Haskell2010

Biobase.BLAST.Types

Description

Encoding of tabular NCBI BLAST+ output

Documentation

data BlastTabularResult Source #

Constructors

BlastTabularResult
Fields blastProgram :: !BlastProgram blastQueryId :: !ByteString blastDatabase :: !ByteString blastHitNumber :: !Int hitLines :: !(Vector BlastTabularHit)

Instances

Eq BlastTabularResult Source #
Methods (==) :: BlastTabularResult -> BlastTabularResult -> Bool # (/=) :: BlastTabularResult -> BlastTabularResult -> Bool #
Show BlastTabularResult Source #
Methods showsPrec :: Int -> BlastTabularResult -> ShowS # show :: BlastTabularResult -> String # showList :: [BlastTabularResult] -> ShowS #

data BlastProgram Source #

Constructors

BlastX
BlastP
BlastN

Instances

Eq BlastProgram Source #
Methods (==) :: BlastProgram -> BlastProgram -> Bool # (/=) :: BlastProgram -> BlastProgram -> Bool #
Show BlastProgram Source #
Methods showsPrec :: Int -> BlastProgram -> ShowS # show :: BlastProgram -> String # showList :: [BlastProgram] -> ShowS #

data BlastTabularHit Source #

Constructors

BlastTabularHit
Fields queryId :: !ByteString subjectId :: !ByteString seqIdentity :: !Double alignmentLength :: !Int misMatches :: !Int gapOpenScore :: !Int queryStart :: !Int queryEnd :: !Int hitSeqStart :: !Int hitSeqEnd :: !Int eValue :: !Double bitScore :: !Double subjectFrame :: !Int querySeq :: !ByteString subjectSeq :: !ByteString

Instances

Eq BlastTabularHit Source #
Methods (==) :: BlastTabularHit -> BlastTabularHit -> Bool # (/=) :: BlastTabularHit -> BlastTabularHit -> Bool #
Show BlastTabularHit Source #
Methods showsPrec :: Int -> BlastTabularHit -> ShowS # show :: BlastTabularHit -> String # showList :: [BlastTabularHit] -> ShowS #