sequence-formats: A package with basic parsing utilities for several Bioinformatic data formats.

[ bioinformatics, gpl, library ] [ Propose Tags ]

Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file formats used in population genetics analyses.

[Skip to Readme]


Maintainer's Corner

Package maintainers

For package maintainers and hackage trustees


Versions [RSS], 1.3.1, 1.3.2,, 1.3.3, 1.4.0,, 1.4.1, 1.5.0, 1.5.1,,,,, 1.5.2, 1.6.0, 1.6.1, 1.6.3,,,, 1.7.0, 1.7.1,,
Change log
Dependencies attoparsec, base (>=4.7 && <5), bytestring, containers, errors, exceptions, foldl, lens-family, pipes, pipes-attoparsec, pipes-bytestring, pipes-safe, transformers, vector [details]
License GPL-3.0-only
Author Stephan Schiffels
Category Bioinformatics
Home page
Bug tracker
Uploaded by stephan_schiffels at 2024-03-01T12:38:53Z
Distributions LTSHaskell:, NixOS:, Stackage:
Reverse Dependencies 1 direct, 0 indirect [details]
Downloads 6162 total (79 in the last 30 days)
Rating (no votes yet) [estimated by Bayesian average]
Your Rating
  • λ
  • λ
  • λ
Status Docs available [build log]
Last success reported on 2024-03-01 [all 1 reports]

Readme for sequence-formats-

[back to package description]

Sequence-Formats is a Haskell package to provide file parsers and writers for some commonly, and less commonly used file formats in Bioinformatics, speficially population genetics.

The library makes heavy use of the pipes library to provide Producers and Consumers for reading and writing files.