Copyright	(c) Matthew Mosior 2023
License	BSD-style
Maintainer	mattm.github@gmail.com
Portability	portable
Safe Haskell	Safe-Inferred
Language	Haskell2010

Data.SAM.Version1_6.Header.RG

Contents

SAM version 1.6 Read group data type
SAM version 1.6 Read group data types

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

Synopsis

data SAM_V1_6_Read_Group = SAM_V1_6_Read_Group {
}
data SAM_V1_6_Read_Group_Identifier = SAM_V1_6_Read_Group_Identifier {
- sam_v1_6_read_group_identifier_tag :: Seq Word8
- sam_v1_6_read_group_identifier_value :: ByteString
}
data SAM_V1_6_Read_Group_Barcode_Sequence = SAM_V1_6_Read_Group_Barcode_Sequence {
- sam_v1_6_read_group_barcode_sequence_tag :: Seq Word8
- sam_v1_6_read_group_barcode_sequence_value :: ByteString
}
data SAM_V1_6_Read_Group_Sequencing_Center = SAM_V1_6_Read_Group_Sequencing_Center {
- sam_v1_6_read_group_sequencing_center_tag :: Seq Word8
- sam_v1_6_read_group_sequencing_center_value :: ByteString
}
data SAM_V1_6_Read_Group_Description = SAM_V1_6_Read_Group_Description {
- sam_v1_6_read_group_description_tag :: Seq Word8
- sam_v1_6_read_group_description_value :: ByteString
}
data SAM_V1_6_Read_Group_Run_Date = SAM_V1_6_Read_Group_Run_Date {
- sam_v1_6_read_group_run_date_tag :: Seq Word8
- sam_v1_6_read_group_run_date_value :: ByteString
}
data SAM_V1_6_Read_Group_Flow_Order = SAM_V1_6_Read_Group_Flow_Order {
- sam_v1_6_read_group_flow_order_tag :: Seq Word8
- sam_v1_6_read_group_flow_order_value :: ByteString
}
data SAM_V1_6_Read_Group_Key_Sequence = SAM_V1_6_Read_Group_Key_Sequence {
- sam_v1_6_read_group_key_sequence_tag :: Seq Word8
- sam_v1_6_read_group_key_sequence_value :: ByteString
}
data SAM_V1_6_Read_Group_Library = SAM_V1_6_Read_Group_Library {
- sam_v1_6_read_group_library_tag :: Seq Word8
- sam_v1_6_read_group_library_value :: ByteString
}
data SAM_V1_6_Read_Group_Programs = SAM_V1_6_Read_Group_Programs {
- sam_v1_6_read_group_programs_tag :: Seq Word8
- sam_v1_6_read_group_programs_value :: ByteString
}
data SAM_V1_6_Read_Group_Predicted_Median_Insert_Size = SAM_V1_6_Read_Group_Predicted_Median_Insert_Size {
- sam_v1_6_read_group_predicted_median_insert_size_tag :: Seq Word8
- sam_v1_6_read_group_predicted_median_insert_size_value :: ByteString
}
data SAM_V1_6_Read_Group_Platform = SAM_V1_6_Read_Group_Platform {
- sam_v1_6_read_group_platform_tag :: Seq Word8
- sam_v1_6_read_group_platform_value :: ByteString
}
data SAM_V1_6_Read_Group_Platform_Model = SAM_V1_6_Read_Group_Platform_Model {
- sam_v1_6_read_group_platform_model_tag :: Seq Word8
- sam_v1_6_read_group_platform_model_value :: ByteString
}
data SAM_V1_6_Read_Group_Platform_Unit = SAM_V1_6_Read_Group_Platform_Unit {
- sam_v1_6_read_group_platform_unit_tag :: Seq Word8
- sam_v1_6_read_group_platform_unit_value :: ByteString
}
data SAM_V1_6_Read_Group_Sample = SAM_V1_6_Read_Group_Sample {
- sam_v1_6_read_group_sample_tag :: Seq Word8
- sam_v1_6_read_group_sample_value :: ByteString
}

SAM version 1.6 Read group data type

data SAM_V1_6_Read_Group Source #

Custom SAM (version 1.6) SAM_V1_6_Read_Group data type.

See section 1.3 of the SAM v1.6 specification documentation.

Constructors

SAM_V1_6_Read_Group

Fields

Instances

Instances details

Show SAM_V1_6_Read_Group Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group -> ShowS # show :: SAM_V1_6_Read_Group -> String # showList :: [SAM_V1_6_Read_Group] -> ShowS #

SAM version 1.6 Read group data types

data SAM_V1_6_Read_Group_Identifier Source #

ID tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Identifier
Fields sam_v1_6_read_group_identifier_tag :: Seq Word8 sam_v1_6_read_group_identifier_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Identifier Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Identifier :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Identifier -> Rep SAM_V1_6_Read_Group_Identifier x # to :: Rep SAM_V1_6_Read_Group_Identifier x -> SAM_V1_6_Read_Group_Identifier #
Show SAM_V1_6_Read_Group_Identifier Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Identifier -> ShowS # show :: SAM_V1_6_Read_Group_Identifier -> String # showList :: [SAM_V1_6_Read_Group_Identifier] -> ShowS #
Eq SAM_V1_6_Read_Group_Identifier Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Identifier -> SAM_V1_6_Read_Group_Identifier -> Bool # (/=) :: SAM_V1_6_Read_Group_Identifier -> SAM_V1_6_Read_Group_Identifier -> Bool #
type Rep SAM_V1_6_Read_Group_Identifier Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Identifier = D1 ('MetaData "SAM_V1_6_Read_Group_Identifier" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Identifier" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_identifier_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_identifier_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Barcode_Sequence Source #

BC tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Barcode_Sequence
Fields sam_v1_6_read_group_barcode_sequence_tag :: Seq Word8 sam_v1_6_read_group_barcode_sequence_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Barcode_Sequence Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Barcode_Sequence :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Barcode_Sequence -> Rep SAM_V1_6_Read_Group_Barcode_Sequence x # to :: Rep SAM_V1_6_Read_Group_Barcode_Sequence x -> SAM_V1_6_Read_Group_Barcode_Sequence #
Show SAM_V1_6_Read_Group_Barcode_Sequence Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Barcode_Sequence -> ShowS # show :: SAM_V1_6_Read_Group_Barcode_Sequence -> String # showList :: [SAM_V1_6_Read_Group_Barcode_Sequence] -> ShowS #
Eq SAM_V1_6_Read_Group_Barcode_Sequence Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Barcode_Sequence -> SAM_V1_6_Read_Group_Barcode_Sequence -> Bool # (/=) :: SAM_V1_6_Read_Group_Barcode_Sequence -> SAM_V1_6_Read_Group_Barcode_Sequence -> Bool #
type Rep SAM_V1_6_Read_Group_Barcode_Sequence Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Barcode_Sequence = D1 ('MetaData "SAM_V1_6_Read_Group_Barcode_Sequence" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Barcode_Sequence" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_barcode_sequence_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_barcode_sequence_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Sequencing_Center Source #

CN tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Sequencing_Center
Fields sam_v1_6_read_group_sequencing_center_tag :: Seq Word8 sam_v1_6_read_group_sequencing_center_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Sequencing_Center Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Sequencing_Center :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Sequencing_Center -> Rep SAM_V1_6_Read_Group_Sequencing_Center x # to :: Rep SAM_V1_6_Read_Group_Sequencing_Center x -> SAM_V1_6_Read_Group_Sequencing_Center #
Show SAM_V1_6_Read_Group_Sequencing_Center Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Sequencing_Center -> ShowS # show :: SAM_V1_6_Read_Group_Sequencing_Center -> String # showList :: [SAM_V1_6_Read_Group_Sequencing_Center] -> ShowS #
Eq SAM_V1_6_Read_Group_Sequencing_Center Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Sequencing_Center -> SAM_V1_6_Read_Group_Sequencing_Center -> Bool # (/=) :: SAM_V1_6_Read_Group_Sequencing_Center -> SAM_V1_6_Read_Group_Sequencing_Center -> Bool #
type Rep SAM_V1_6_Read_Group_Sequencing_Center Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Sequencing_Center = D1 ('MetaData "SAM_V1_6_Read_Group_Sequencing_Center" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Sequencing_Center" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_sequencing_center_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_sequencing_center_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Description Source #

DS tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Description
Fields sam_v1_6_read_group_description_tag :: Seq Word8 sam_v1_6_read_group_description_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Description Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Description :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Description -> Rep SAM_V1_6_Read_Group_Description x # to :: Rep SAM_V1_6_Read_Group_Description x -> SAM_V1_6_Read_Group_Description #
Show SAM_V1_6_Read_Group_Description Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Description -> ShowS # show :: SAM_V1_6_Read_Group_Description -> String # showList :: [SAM_V1_6_Read_Group_Description] -> ShowS #
Eq SAM_V1_6_Read_Group_Description Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Description -> SAM_V1_6_Read_Group_Description -> Bool # (/=) :: SAM_V1_6_Read_Group_Description -> SAM_V1_6_Read_Group_Description -> Bool #
type Rep SAM_V1_6_Read_Group_Description Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Description = D1 ('MetaData "SAM_V1_6_Read_Group_Description" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Description" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_description_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_description_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Run_Date Source #

DT tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Run_Date
Fields sam_v1_6_read_group_run_date_tag :: Seq Word8 sam_v1_6_read_group_run_date_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Run_Date Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Run_Date :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Run_Date -> Rep SAM_V1_6_Read_Group_Run_Date x # to :: Rep SAM_V1_6_Read_Group_Run_Date x -> SAM_V1_6_Read_Group_Run_Date #
Show SAM_V1_6_Read_Group_Run_Date Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Run_Date -> ShowS # show :: SAM_V1_6_Read_Group_Run_Date -> String # showList :: [SAM_V1_6_Read_Group_Run_Date] -> ShowS #
Eq SAM_V1_6_Read_Group_Run_Date Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Run_Date -> SAM_V1_6_Read_Group_Run_Date -> Bool # (/=) :: SAM_V1_6_Read_Group_Run_Date -> SAM_V1_6_Read_Group_Run_Date -> Bool #
type Rep SAM_V1_6_Read_Group_Run_Date Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Run_Date = D1 ('MetaData "SAM_V1_6_Read_Group_Run_Date" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Run_Date" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_run_date_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_run_date_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Flow_Order Source #

FO tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Flow_Order
Fields sam_v1_6_read_group_flow_order_tag :: Seq Word8 sam_v1_6_read_group_flow_order_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Flow_Order Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Flow_Order :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Flow_Order -> Rep SAM_V1_6_Read_Group_Flow_Order x # to :: Rep SAM_V1_6_Read_Group_Flow_Order x -> SAM_V1_6_Read_Group_Flow_Order #
Show SAM_V1_6_Read_Group_Flow_Order Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Flow_Order -> ShowS # show :: SAM_V1_6_Read_Group_Flow_Order -> String # showList :: [SAM_V1_6_Read_Group_Flow_Order] -> ShowS #
Eq SAM_V1_6_Read_Group_Flow_Order Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Flow_Order -> SAM_V1_6_Read_Group_Flow_Order -> Bool # (/=) :: SAM_V1_6_Read_Group_Flow_Order -> SAM_V1_6_Read_Group_Flow_Order -> Bool #
type Rep SAM_V1_6_Read_Group_Flow_Order Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Flow_Order = D1 ('MetaData "SAM_V1_6_Read_Group_Flow_Order" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Flow_Order" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_flow_order_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_flow_order_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Key_Sequence Source #

KS tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Key_Sequence
Fields sam_v1_6_read_group_key_sequence_tag :: Seq Word8 sam_v1_6_read_group_key_sequence_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Key_Sequence Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Key_Sequence :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Key_Sequence -> Rep SAM_V1_6_Read_Group_Key_Sequence x # to :: Rep SAM_V1_6_Read_Group_Key_Sequence x -> SAM_V1_6_Read_Group_Key_Sequence #
Show SAM_V1_6_Read_Group_Key_Sequence Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Key_Sequence -> ShowS # show :: SAM_V1_6_Read_Group_Key_Sequence -> String # showList :: [SAM_V1_6_Read_Group_Key_Sequence] -> ShowS #
Eq SAM_V1_6_Read_Group_Key_Sequence Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Key_Sequence -> SAM_V1_6_Read_Group_Key_Sequence -> Bool # (/=) :: SAM_V1_6_Read_Group_Key_Sequence -> SAM_V1_6_Read_Group_Key_Sequence -> Bool #
type Rep SAM_V1_6_Read_Group_Key_Sequence Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Key_Sequence = D1 ('MetaData "SAM_V1_6_Read_Group_Key_Sequence" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Key_Sequence" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_key_sequence_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_key_sequence_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Library Source #

LB tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Library
Fields sam_v1_6_read_group_library_tag :: Seq Word8 sam_v1_6_read_group_library_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Library Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Library :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Library -> Rep SAM_V1_6_Read_Group_Library x # to :: Rep SAM_V1_6_Read_Group_Library x -> SAM_V1_6_Read_Group_Library #
Show SAM_V1_6_Read_Group_Library Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Library -> ShowS # show :: SAM_V1_6_Read_Group_Library -> String # showList :: [SAM_V1_6_Read_Group_Library] -> ShowS #
Eq SAM_V1_6_Read_Group_Library Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Library -> SAM_V1_6_Read_Group_Library -> Bool # (/=) :: SAM_V1_6_Read_Group_Library -> SAM_V1_6_Read_Group_Library -> Bool #
type Rep SAM_V1_6_Read_Group_Library Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Library = D1 ('MetaData "SAM_V1_6_Read_Group_Library" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Library" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_library_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_library_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Programs Source #

PG tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Programs
Fields sam_v1_6_read_group_programs_tag :: Seq Word8 sam_v1_6_read_group_programs_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Programs Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Programs :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Programs -> Rep SAM_V1_6_Read_Group_Programs x # to :: Rep SAM_V1_6_Read_Group_Programs x -> SAM_V1_6_Read_Group_Programs #
Show SAM_V1_6_Read_Group_Programs Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Programs -> ShowS # show :: SAM_V1_6_Read_Group_Programs -> String # showList :: [SAM_V1_6_Read_Group_Programs] -> ShowS #
Eq SAM_V1_6_Read_Group_Programs Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Programs -> SAM_V1_6_Read_Group_Programs -> Bool # (/=) :: SAM_V1_6_Read_Group_Programs -> SAM_V1_6_Read_Group_Programs -> Bool #
type Rep SAM_V1_6_Read_Group_Programs Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Programs = D1 ('MetaData "SAM_V1_6_Read_Group_Programs" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Programs" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_programs_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_programs_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source #

PI tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Predicted_Median_Insert_Size
Fields sam_v1_6_read_group_predicted_median_insert_size_tag :: Seq Word8 sam_v1_6_read_group_predicted_median_insert_size_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size x # to :: Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size x -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size #
Show SAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> ShowS # show :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> String # showList :: [SAM_V1_6_Read_Group_Predicted_Median_Insert_Size] -> ShowS #
Eq SAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Bool # (/=) :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Bool #
type Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size = D1 ('MetaData "SAM_V1_6_Read_Group_Predicted_Median_Insert_Size" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Predicted_Median_Insert_Size" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_predicted_median_insert_size_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_predicted_median_insert_size_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Platform Source #

PL tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform
Fields sam_v1_6_read_group_platform_tag :: Seq Word8 sam_v1_6_read_group_platform_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Platform Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Platform :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Platform -> Rep SAM_V1_6_Read_Group_Platform x # to :: Rep SAM_V1_6_Read_Group_Platform x -> SAM_V1_6_Read_Group_Platform #
Show SAM_V1_6_Read_Group_Platform Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Platform -> ShowS # show :: SAM_V1_6_Read_Group_Platform -> String # showList :: [SAM_V1_6_Read_Group_Platform] -> ShowS #
Eq SAM_V1_6_Read_Group_Platform Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Platform -> SAM_V1_6_Read_Group_Platform -> Bool # (/=) :: SAM_V1_6_Read_Group_Platform -> SAM_V1_6_Read_Group_Platform -> Bool #
type Rep SAM_V1_6_Read_Group_Platform Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Platform = D1 ('MetaData "SAM_V1_6_Read_Group_Platform" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Platform" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Platform_Model Source #

PM tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform_Model
Fields sam_v1_6_read_group_platform_model_tag :: Seq Word8 sam_v1_6_read_group_platform_model_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Platform_Model Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Platform_Model :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Platform_Model -> Rep SAM_V1_6_Read_Group_Platform_Model x # to :: Rep SAM_V1_6_Read_Group_Platform_Model x -> SAM_V1_6_Read_Group_Platform_Model #
Show SAM_V1_6_Read_Group_Platform_Model Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Platform_Model -> ShowS # show :: SAM_V1_6_Read_Group_Platform_Model -> String # showList :: [SAM_V1_6_Read_Group_Platform_Model] -> ShowS #
Eq SAM_V1_6_Read_Group_Platform_Model Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Platform_Model -> SAM_V1_6_Read_Group_Platform_Model -> Bool # (/=) :: SAM_V1_6_Read_Group_Platform_Model -> SAM_V1_6_Read_Group_Platform_Model -> Bool #
type Rep SAM_V1_6_Read_Group_Platform_Model Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Platform_Model = D1 ('MetaData "SAM_V1_6_Read_Group_Platform_Model" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Platform_Model" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_model_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_model_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Platform_Unit Source #

PU tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform_Unit
Fields sam_v1_6_read_group_platform_unit_tag :: Seq Word8 sam_v1_6_read_group_platform_unit_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Platform_Unit Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Platform_Unit :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Platform_Unit -> Rep SAM_V1_6_Read_Group_Platform_Unit x # to :: Rep SAM_V1_6_Read_Group_Platform_Unit x -> SAM_V1_6_Read_Group_Platform_Unit #
Show SAM_V1_6_Read_Group_Platform_Unit Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Platform_Unit -> ShowS # show :: SAM_V1_6_Read_Group_Platform_Unit -> String # showList :: [SAM_V1_6_Read_Group_Platform_Unit] -> ShowS #
Eq SAM_V1_6_Read_Group_Platform_Unit Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Platform_Unit -> SAM_V1_6_Read_Group_Platform_Unit -> Bool # (/=) :: SAM_V1_6_Read_Group_Platform_Unit -> SAM_V1_6_Read_Group_Platform_Unit -> Bool #
type Rep SAM_V1_6_Read_Group_Platform_Unit Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Platform_Unit = D1 ('MetaData "SAM_V1_6_Read_Group_Platform_Unit" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Platform_Unit" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_unit_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_unit_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Sample Source #

SM tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Sample
Fields sam_v1_6_read_group_sample_tag :: Seq Word8 sam_v1_6_read_group_sample_value :: ByteString

Instances

Instances details

Generic SAM_V1_6_Read_Group_Sample Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Associated Types type Rep SAM_V1_6_Read_Group_Sample :: Type -> Type # Methods from :: SAM_V1_6_Read_Group_Sample -> Rep SAM_V1_6_Read_Group_Sample x # to :: Rep SAM_V1_6_Read_Group_Sample x -> SAM_V1_6_Read_Group_Sample #
Show SAM_V1_6_Read_Group_Sample Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods showsPrec :: Int -> SAM_V1_6_Read_Group_Sample -> ShowS # show :: SAM_V1_6_Read_Group_Sample -> String # showList :: [SAM_V1_6_Read_Group_Sample] -> ShowS #
Eq SAM_V1_6_Read_Group_Sample Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG Methods (==) :: SAM_V1_6_Read_Group_Sample -> SAM_V1_6_Read_Group_Sample -> Bool # (/=) :: SAM_V1_6_Read_Group_Sample -> SAM_V1_6_Read_Group_Sample -> Bool #
type Rep SAM_V1_6_Read_Group_Sample Source #
Instance details Defined in Data.SAM.Version1_6.Header.RG type Rep SAM_V1_6_Read_Group_Sample = D1 ('MetaData "SAM_V1_6_Read_Group_Sample" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.2-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Sample" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_sample_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_sample_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))