fasta-0.5.1.3: A simple, mindless parser for fasta files.

Safe HaskellSafe-Inferred
LanguageHaskell98

Data.Fasta.Text.Lazy.Types

Description

Collects all application specific types. Used here for Text.Lazy

Synopsis

Documentation

data FastaSequence Source

Constructors

FastaSequence 

Fields

fastaHeader :: Text
 
fastaSeq :: Text
 

Instances

type Clone = FastaSequence Source

type Germline = FastaSequence Source

type Codon = Text Source

type CloneMap = Map (Int, Germline) [Clone] Source

A clone is a collection of sequences derived from a germline with a specific identifier

class ShowFasta a where Source

Methods

showFasta :: a -> Text Source

Instances