| Safe Haskell | Safe-Inferred |
|---|---|
| Language | Haskell98 |
Data.Fasta.Text.Lazy.Parse
Description
Collection of functions for the parsing of a fasta file. Uses the lazy Text type.
- parseFasta :: Text -> [FastaSequence]
- parseCLIPFasta :: Text -> CloneMap
- removeNs :: [FastaSequence] -> [FastaSequence]
- removeCLIPNs :: CloneMap -> CloneMap
Documentation
parseFasta :: Text -> [FastaSequence] Source
Parse a standard fasta file into lazy text sequences
parseCLIPFasta :: Text -> CloneMap Source
Parse a CLIP fasta file into lazy text sequences
removeNs :: [FastaSequence] -> [FastaSequence] Source
Remove Ns from a collection of sequences
removeCLIPNs :: CloneMap -> CloneMap Source
Remove Ns from a collection of CLIP fasta sequences