elynx-tree-0.7.2.2: Handle phylogenetic trees
Copyright2021 Dominik Schrempf
LicenseGPL-3.0-or-later
Maintainerdominik.schrempf@gmail.com
Stabilityunstable
Portabilityportable
Safe HaskellSafe-Inferred
LanguageHaskell2010

ELynx.Tree.Distribution.BirthDeath

Description

Creation date: Tue Feb 13 13:16:18 2018.

See Gernhard, T. (2008). The conditioned reconstructed process. Journal of Theoretical Biology, 253(4), 769–778. http://doi.org/10.1016/j.jtbi.2008.04.005.

Distribution of the values of the point process such that it corresponds to reconstructed trees under the birth and death process.

Synopsis

Documentation

data BirthDeathDistribution Source #

Distribution of the values of the point process such that it corresponds to a reconstructed tree of the birth and death process.

Constructors

BDD 

Fields

Instances

Instances details
Data BirthDeathDistribution Source # 
Instance details

Defined in ELynx.Tree.Distribution.BirthDeath

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> BirthDeathDistribution -> c BirthDeathDistribution #

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c BirthDeathDistribution #

toConstr :: BirthDeathDistribution -> Constr #

dataTypeOf :: BirthDeathDistribution -> DataType #

dataCast1 :: Typeable t => (forall d. Data d => c (t d)) -> Maybe (c BirthDeathDistribution) #

dataCast2 :: Typeable t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c BirthDeathDistribution) #

gmapT :: (forall b. Data b => b -> b) -> BirthDeathDistribution -> BirthDeathDistribution #

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> BirthDeathDistribution -> r #

gmapQr :: forall r r'. (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> BirthDeathDistribution -> r #

gmapQ :: (forall d. Data d => d -> u) -> BirthDeathDistribution -> [u] #

gmapQi :: Int -> (forall d. Data d => d -> u) -> BirthDeathDistribution -> u #

gmapM :: Monad m => (forall d. Data d => d -> m d) -> BirthDeathDistribution -> m BirthDeathDistribution #

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> BirthDeathDistribution -> m BirthDeathDistribution #

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> BirthDeathDistribution -> m BirthDeathDistribution #

Generic BirthDeathDistribution Source # 
Instance details

Defined in ELynx.Tree.Distribution.BirthDeath

Associated Types

type Rep BirthDeathDistribution :: Type -> Type #

Eq BirthDeathDistribution Source # 
Instance details

Defined in ELynx.Tree.Distribution.BirthDeath

ContDistr BirthDeathDistribution Source # 
Instance details

Defined in ELynx.Tree.Distribution.BirthDeath

ContGen BirthDeathDistribution Source # 
Instance details

Defined in ELynx.Tree.Distribution.BirthDeath

Distribution BirthDeathDistribution Source # 
Instance details

Defined in ELynx.Tree.Distribution.BirthDeath

type Rep BirthDeathDistribution Source # 
Instance details

Defined in ELynx.Tree.Distribution.BirthDeath

type Rep BirthDeathDistribution = D1 ('MetaData "BirthDeathDistribution" "ELynx.Tree.Distribution.BirthDeath" "elynx-tree-0.7.2.2-7v79cynrH4qIkHZDd1p2Yg" 'False) (C1 ('MetaCons "BDD" 'PrefixI 'True) (S1 ('MetaSel ('Just "bddTOr") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Time) :*: (S1 ('MetaSel ('Just "bddLa") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Rate) :*: S1 ('MetaSel ('Just "bddMu") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Rate))))

cumulative :: BirthDeathDistribution -> Time -> Double Source #

Cumulative distribution function Eq. (3).

density :: BirthDeathDistribution -> Time -> Double Source #

Density function Eq. (2).

quantile :: BirthDeathDistribution -> Double -> Time Source #

Inverted cumulative probability distribution cumulative. See also ContDistr.