Copyright	(c) Dominik Schrempf 2019
License	GPL-3
Maintainer	dominik.schrempf@gmail.com
Stability	unstable
Portability	portable
Safe Haskell	None
Language	Haskell2010

ELynx.Data.Tree.PhyloTree

Description

Creation date: Thu Jan 17 16:08:54 2019.

Phylogenetic nodes labels, aka PhyloLabels, have a branch length and an arbitrary label type, e.g., of type Int.

Synopsis

data PhyloLabel a = PhyloLabel {
- label :: a
- brSup :: Maybe Double
- brLen :: Maybe Double
}
removeBrInfo :: Tree (PhyloLabel a) -> Tree a

Documentation

data PhyloLabel a Source #

A primitive label type for phylogenetic trees with a name, possibly a branch support value, and possibly a branch length.

Constructors

PhyloLabel
Fields label :: a brSup :: Maybe Double brLen :: Maybe Double

Instances

Eq a => Eq (PhyloLabel a) Source #
Instance details Defined in ELynx.Data.Tree.PhyloTree Methods (==) :: PhyloLabel a -> PhyloLabel a -> Bool # (/=) :: PhyloLabel a -> PhyloLabel a -> Bool #
Ord a => Ord (PhyloLabel a) Source #
Instance details Defined in ELynx.Data.Tree.PhyloTree Methods compare :: PhyloLabel a -> PhyloLabel a -> Ordering # (<) :: PhyloLabel a -> PhyloLabel a -> Bool # (<=) :: PhyloLabel a -> PhyloLabel a -> Bool # (>) :: PhyloLabel a -> PhyloLabel a -> Bool # (>=) :: PhyloLabel a -> PhyloLabel a -> Bool # max :: PhyloLabel a -> PhyloLabel a -> PhyloLabel a # min :: PhyloLabel a -> PhyloLabel a -> PhyloLabel a #
Read a => Read (PhyloLabel a) Source #
Instance details Defined in ELynx.Data.Tree.PhyloTree Methods readsPrec :: Int -> ReadS (PhyloLabel a) # readList :: ReadS [PhyloLabel a] # readPrec :: ReadPrec (PhyloLabel a) # readListPrec :: ReadPrec [PhyloLabel a] #
Show a => Show (PhyloLabel a) Source #
Instance details Defined in ELynx.Data.Tree.PhyloTree Methods showsPrec :: Int -> PhyloLabel a -> ShowS # show :: PhyloLabel a -> String # showList :: [PhyloLabel a] -> ShowS #
Arbitrary a => Arbitrary (PhyloLabel a) Source #
Instance details Defined in ELynx.Data.Tree.PhyloTree Methods arbitrary :: Gen (PhyloLabel a) # shrink :: PhyloLabel a -> [PhyloLabel a] #
BranchSupported (PhyloLabel a) Source #
Instance details Defined in ELynx.Data.Tree.PhyloTree Methods getBranchSupport :: PhyloLabel a -> BranchSupport Source # setBranchSupport :: BranchSupport -> PhyloLabel a -> PhyloLabel a Source #
Named a => Named (PhyloLabel a) Source #
Instance details Defined in ELynx.Data.Tree.PhyloTree Methods getName :: PhyloLabel a -> ByteString Source #
Measurable (PhyloLabel a) Source #	If no branch length is available, 0 is returned. This is probably not the best (and final) behavior.
Instance details Defined in ELynx.Data.Tree.PhyloTree Methods getLen :: PhyloLabel a -> Double Source # setLen :: Double -> PhyloLabel a -> PhyloLabel a Source #

removeBrInfo :: Tree (PhyloLabel a) -> Tree a Source #

Remove all branch relevant information from all nodes of the tree; only retain the labels.