Contents
Index
biosff-0.2: Library and executables for working with SFF files
Index
bases
Bio.Sequence.SFF
baseToFlowPos
Bio.Sequence.SFF
clip_adapter_left
Bio.Sequence.SFF
clip_adapter_right
Bio.Sequence.SFF
clip_qual_left
Bio.Sequence.SFF
clip_qual_right
Bio.Sequence.SFF
CommonHeader
1 (Type/Class)
Bio.Sequence.SFF
2 (Data Constructor)
Bio.Sequence.SFF
convert
Bio.Sequence.SFF
cumulative_index
Bio.Sequence.SFF
date
Bio.Sequence.SFF
decodeReadName
Bio.Sequence.SFF
encodeReadName
Bio.Sequence.SFF
Flow
Bio.Sequence.SFF
flow
Bio.Sequence.SFF
flowgram
Bio.Sequence.SFF
flowgram_fmt
Bio.Sequence.SFF
flowToBasePos
Bio.Sequence.SFF
flow_data
Bio.Sequence.SFF
flow_index
Bio.Sequence.SFF
flow_length
Bio.Sequence.SFF
getRB
Bio.Sequence.SFF
Index
Bio.Sequence.SFF
index_length
Bio.Sequence.SFF
index_offset
Bio.Sequence.SFF
key
Bio.Sequence.SFF
key_length
Bio.Sequence.SFF
masked_bases
Bio.Sequence.SFF
name_length
Bio.Sequence.SFF
num_bases
Bio.Sequence.SFF
num_reads
Bio.Sequence.SFF
packFlows
Bio.Sequence.SFF
putRB
Bio.Sequence.SFF
Qual
Bio.Sequence.SFF
QualData
Bio.Sequence.SFF
quality
Bio.Sequence.SFF
ReadBlock
1 (Type/Class)
Bio.Sequence.SFF
2 (Data Constructor)
Bio.Sequence.SFF
ReadHeader
1 (Type/Class)
Bio.Sequence.SFF
2 (Data Constructor)
Bio.Sequence.SFF
ReadName
1 (Type/Class)
Bio.Sequence.SFF
2 (Data Constructor)
Bio.Sequence.SFF
readSFF
Bio.Sequence.SFF
read_header
Bio.Sequence.SFF
read_name
Bio.Sequence.SFF
recoverSFF
Bio.Sequence.SFF
region
Bio.Sequence.SFF
SeqData
Bio.Sequence.SFF
SFF
1 (Type/Class)
Bio.Sequence.SFF
2 (Data Constructor)
Bio.Sequence.SFF
test
Bio.Sequence.SFF
time
Bio.Sequence.SFF
trim
Bio.Sequence.SFF
trimFlows
Bio.Sequence.SFF
trimFromTo
Bio.Sequence.SFF
unpackFlows
Bio.Sequence.SFF
writeSFF
Bio.Sequence.SFF
writeSFF'
Bio.Sequence.SFF
x_loc
Bio.Sequence.SFF
y_loc
Bio.Sequence.SFF