Bio.GenbankData

Description

Synopsis

• data Genbank = Genbank {
  • locus :: ByteString
  • genbankLength :: Int
  • moleculeType :: ByteString
  • circular :: Maybe ByteString
  • division :: ByteString
  • creationDate :: ByteString
  • definition :: ByteString
  • accession :: ByteString
  • version :: ByteString
  • geneIdentifier :: ByteString
  • dblink :: Maybe ByteString
  • keywords :: ByteString
  • source :: ByteString
  • organism :: ByteString
  • references :: [Reference]
  • comment :: Maybe ByteString
  • features :: [Feature]
  • contig :: Maybe String
  • origin :: SeqData
  }
• data Feature = Feature {
  • featureType :: ByteString
  • featureCoordinates :: CoordinateSet
  • attributes :: [Attribute]
  • subFeatures :: [SubFeature]
  }
• data Attribute
  • = Flag {
    • flagType :: ByteString
    }
  • | Field {
    • fieldType :: ByteString
    • fieldValue :: ByteString
    }
  • | GOattribute {
    • gotype :: ByteString
    • goid :: ByteString
    • goname :: ByteString
    }
• data SubFeature = SubFeature {
  • subFeatureType :: ByteString
  • subFeatureCoordinates :: CoordinateSet
  • subFeatureAttributes :: [Attribute]
  • subFeatureTranslation :: Maybe SeqData
  }
• data Reference = Reference {
  • index :: Int
  • baseFrom :: Maybe Int
  • baseTo :: Maybe Int
  • authors :: String
  • title :: String
  • journal :: String
  • pubmedId :: Maybe String
  • remark :: Maybe String
  }
• data Coordinates = Coordinates {
  • coordinatesFrom :: Int
  • coordinateFromEqualitySymbol :: Maybe Char
  • coordinatesTo :: Int
  • coordinateToEqualitySymbol :: Maybe Char
  • complement :: Bool
  }
• data DbXRef = DbXRef {
  • db :: ByteString
  • ref :: ByteString
  }
• data CoordinateSet = CoordinateSet {
  • setCoordinates :: [Coordinates]
  • setType :: Maybe String
  }
• data OriginSlice = OriginSlice {
  • originIndex :: Int
  • originSequence :: String
  }
• data GOterm = GOterm {
  • goType :: String
  • goId :: String
  • goName :: String
  }

Documentation