AlignmentAlgorithms-0.1.0.0: Collection of alignment algorithms

Index

afdelinDP.Tree.Align.Global.Affine2
afindelDP.Tree.Align.Global.Affine2
align 
1 (Function)DP.Tree.Edit.Global.Linear2
2 (Function)DP.Tree.Align.Global.Affine2
3 (Function)DP.Seq.Align.SemiGlobal.Infix2
4 (Function)DP.Seq.Align.Global.Linear2
5 (Function)DP.Seq.Align.Global.Affine2
backtrackDP.Seq.Align.Global.Linear2
backtrackFunDP.Seq.Align.Global.Linear2
contLDP.Seq.Align.SemiGlobal.Infix2
contU 
1 (Function)DP.Seq.Align.SemiGlobal.Infix2
2 (Function)DP.Seq.Align.Global.Affine2
delin 
1 (Function)DP.Tree.Edit.Global.Linear2
2 (Function)DP.Tree.Align.Global.Affine2
3 (Function)DP.Seq.Align.Global.Linear2
done 
1 (Function)DP.Tree.Edit.Global.Linear2
2 (Function)DP.Tree.Align.Global.Affine2
3 (Function)DP.Seq.Align.SemiGlobal.Infix2
4 (Function)DP.Seq.Align.Global.Linear2
5 (Function)DP.Seq.Align.Global.Affine2
6 (Function)DP.HMM.States2
fgalignDP.Tree.Align.Global.Affine2
fgdelinDP.Tree.Align.Global.Affine2
fgindelDP.Tree.Align.Global.Affine2
fpalignDP.Tree.Align.Global.Affine2
fpdelinDP.Tree.Align.Global.Affine2
fpindelDP.Tree.Align.Global.Affine2
frSUDDP.Seq.Align.SemiGlobal.Infix2
frSUIDP.Seq.Align.SemiGlobal.Infix2
frSUMDP.Seq.Align.SemiGlobal.Infix2
frUSDDP.Seq.Align.SemiGlobal.Infix2
frUSIDP.Seq.Align.SemiGlobal.Infix2
frUSMDP.Seq.Align.SemiGlobal.Infix2
gAlign 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
gDelin 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
gDone 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
gfalignDP.Tree.Align.Global.Affine2
gfdelinDP.Tree.Align.Global.Affine2
gFgapDP.Tree.Align.Global.AffineSmall2
gFinalDoneDP.Tree.Align.Global.AffineSmall2
gfindelDP.Tree.Align.Global.Affine2
gGlobal 
1 (Function)DP.Tree.Edit.Global.Linear2
2 (Function)DP.Tree.Align.Global.Linear2
3 (Function)DP.Tree.Align.Global.AffineSmall2
4 (Function)DP.Tree.Align.Global.Affine2
5 (Function)DP.Seq.Align.Global.Linear2
gGotohDP.Seq.Align.Global.Affine2
gH 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
gHMMDP.HMM.States2
gIndel 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
gInfixDP.Seq.Align.SemiGlobal.Infix2
gIter 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
gLabolg 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
gpalignDP.Tree.Align.Global.Affine2
gpdelinDP.Tree.Align.Global.Affine2
gPgapDP.Tree.Align.Global.AffineSmall2
gpindelDP.Tree.Align.Global.Affine2
gSgapDP.Tree.Align.Global.AffineSmall2
gSiterDP.Tree.Align.Global.AffineSmall2
h 
1 (Function)DP.Tree.Edit.Global.Linear2
2 (Function)DP.Tree.Align.Global.Affine2
3 (Function)DP.Seq.Align.SemiGlobal.Infix2
4 (Function)DP.Seq.Align.Global.Linear2
5 (Function)DP.Seq.Align.Global.Affine2
6 (Function)DP.HMM.States2
indel 
1 (Function)DP.Tree.Edit.Global.Linear2
2 (Function)DP.Tree.Align.Global.Affine2
3 (Function)DP.Seq.Align.Global.Linear2
iter 
1 (Function)DP.Tree.Edit.Global.Linear2
2 (Function)DP.Tree.Align.Global.Affine2
lAlign 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
lDelin 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
lDone 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
lFgapDP.Tree.Align.Global.AffineSmall2
lFinalDoneDP.Tree.Align.Global.AffineSmall2
lH 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
lIndel 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
lIter 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
lPgapDP.Tree.Align.Global.AffineSmall2
lSgapDP.Tree.Align.Global.AffineSmall2
lSiterDP.Tree.Align.Global.AffineSmall2
mstayDP.HMM.States2
mtopDP.HMM.States2
openL 
1 (Function)DP.Seq.Align.SemiGlobal.Infix2
2 (Function)DP.Seq.Align.Global.Affine2
openU 
1 (Function)DP.Seq.Align.SemiGlobal.Infix2
2 (Function)DP.Seq.Align.Global.Affine2
pfalignDP.Tree.Align.Global.Affine2
pfdelinDP.Tree.Align.Global.Affine2
pfindelDP.Tree.Align.Global.Affine2
pgalignDP.Tree.Align.Global.Affine2
pgdelinDP.Tree.Align.Global.Affine2
pgindelDP.Tree.Align.Global.Affine2
prePUDP.Seq.Align.SemiGlobal.Infix2
preUPDP.Seq.Align.SemiGlobal.Infix2
pstayDP.HMM.States2
ptomDP.HMM.States2
resig 
1 (Function)DP.Tree.Align.Global.Linear2
2 (Function)DP.Tree.Align.Global.AffineSmall2
runBacktrackDP.Seq.Align.Global.Linear2
SigGlobal 
1 (Type/Class)DP.Tree.Edit.Global.Linear2
2 (Data Constructor)DP.Tree.Edit.Global.Linear2
3 (Type/Class)DP.Tree.Align.Global.Linear2
4 (Data Constructor)DP.Tree.Align.Global.Linear2
5 (Type/Class)DP.Tree.Align.Global.AffineSmall2
6 (Data Constructor)DP.Tree.Align.Global.AffineSmall2
7 (Type/Class)DP.Tree.Align.Global.Affine2
8 (Data Constructor)DP.Tree.Align.Global.Affine2
9 (Type/Class)DP.Seq.Align.Global.Linear2
10 (Data Constructor)DP.Seq.Align.Global.Linear2
SigGotoh 
1 (Type/Class)DP.Seq.Align.Global.Affine2
2 (Data Constructor)DP.Seq.Align.Global.Affine2
SigHMM 
1 (Type/Class)DP.HMM.States2
2 (Data Constructor)DP.HMM.States2
SigInfix 
1 (Type/Class)DP.Seq.Align.SemiGlobal.Infix2
2 (Data Constructor)DP.Seq.Align.SemiGlobal.Infix2
SigLabolg 
1 (Type/Class)DP.Tree.Align.Global.Linear2
2 (Data Constructor)DP.Tree.Align.Global.Linear2
3 (Type/Class)DP.Tree.Align.Global.AffineSmall2
4 (Data Constructor)DP.Tree.Align.Global.AffineSmall2
start 
1 (Function)DP.Seq.Align.SemiGlobal.Infix2
2 (Function)DP.Seq.Align.Global.Affine2
sufSUDP.Seq.Align.SemiGlobal.Infix2
sufUSDP.Seq.Align.SemiGlobal.Infix2
toPUDDP.Seq.Align.SemiGlobal.Infix2
toPUIDP.Seq.Align.SemiGlobal.Infix2
toPUMDP.Seq.Align.SemiGlobal.Infix2
toUPDDP.Seq.Align.SemiGlobal.Infix2
toUPIDP.Seq.Align.SemiGlobal.Infix2
toUPMDP.Seq.Align.SemiGlobal.Infix2