cabal-version: 3.0 -- The cabal-version field refers to the version of the .cabal specification, -- and can be different from the cabal-install (the tool) version and the -- Cabal (the library) version you are using. As such, the Cabal (the library) -- version used must be equal or greater than the version stated in this field. -- Starting from the specification version 2.2, the cabal-version field must be -- the first thing in the cabal file. -- Initial package description 'hs-samtools' generated by -- 'cabal init'. For further documentation, see: -- http://haskell.org/cabal/users-guide/ -- -- The name of the package. name: hs-samtools -- The package version. -- See the Haskell package versioning policy (PVP) for standards -- guiding when and how versions should be incremented. -- https://pvp.haskell.org -- PVP summary: +-+------- breaking API changes -- | | +----- non-breaking API additions -- | | | +--- code changes with no API change version: 0.5.0.0 -- A short (one-line) description of the package. synopsis: Read and write SAM, BAM, and CRAM files. -- A longer description of the package. description: A SAM, BAM, and CRAM file decoder/encoded along with various related functionality associated with these file formats. -- The license under which the package is released. license: BSD-3-Clause -- The file containing the license text. license-file: LICENSE -- The package author(s). author: Matthew Mosior -- An email address to which users can send suggestions, bug reports, and patches. maintainer: mattm.github@gmail.com -- A copyright notice. -- copyright: category: Bioinformatics build-type: Simple -- Extra doc files to be distributed with the package, such as a CHANGELOG or a README. extra-doc-files: CHANGELOG.md -- Extra source files to be distributed with the package, such as examples, or a tutorial module. -- extra-source-files: common warnings ghc-options: -Wall library -- Import common warning flags. import: warnings -- Modules exported by the library. exposed-modules: Data.SAM.Version1_6.Base, Data.SAM.Version1_6.Alignment, Data.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment.BOPT, Data.SAM.Version1_6.Header, Data.SAM.Version1_6.Header.CO, Data.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Read.Base, Data.SAM.Version1_6.Read.Error, Data.SAM.Version1_6.Read.Parser.Alignment.Base, Data.SAM.Version1_6.Read.Parser.Alignment.AOPT, Data.SAM.Version1_6.Read.Parser.Alignment.IOPT, Data.SAM.Version1_6.Read.Parser.Alignment.FOPT, Data.SAM.Version1_6.Read.Parser.Alignment.ZOPT, Data.SAM.Version1_6.Read.Parser.Alignment.HOPT, Data.SAM.Version1_6.Read.Parser.Alignment.BOPT, Data.SAM.Version1_6.Read.Parser.Header.HD.Base, Data.SAM.Version1_6.Read.Parser.Header.HD.VN, Data.SAM.Version1_6.Read.Parser.Header.HD.SO, Data.SAM.Version1_6.Read.Parser.Header.HD.GO, Data.SAM.Version1_6.Read.Parser.Header.HD.SS, Data.SAM.Version1_6.Read.Parser.Header.SQ.Base, Data.SAM.Version1_6.Read.Parser.Header.SQ.SN, Data.SAM.Version1_6.Read.Parser.Header.SQ.LN, Data.SAM.Version1_6.Read.Parser.Header.SQ.AH, Data.SAM.Version1_6.Read.Parser.Header.SQ.AN, Data.SAM.Version1_6.Read.Parser.Header.SQ.AS, Data.SAM.Version1_6.Read.Parser.Header.SQ.DS, Data.SAM.Version1_6.Read.Parser.Header.SQ.M5, Data.SAM.Version1_6.Read.Parser.Header.SQ.SP, Data.SAM.Version1_6.Read.Parser.Header.SQ.TP, Data.SAM.Version1_6.Read.Parser.Header.SQ.UR, Data.SAM.Version1_6.Read.Parser.Header.RG.Base, Data.SAM.Version1_6.Read.Parser.Header.RG.ID, Data.SAM.Version1_6.Read.Parser.Header.RG.BC, Data.SAM.Version1_6.Read.Parser.Header.RG.CN, Data.SAM.Version1_6.Read.Parser.Header.RG.DS, Data.SAM.Version1_6.Read.Parser.Header.RG.DT, Data.SAM.Version1_6.Read.Parser.Header.RG.FO, Data.SAM.Version1_6.Read.Parser.Header.RG.KS, Data.SAM.Version1_6.Read.Parser.Header.RG.LB, Data.SAM.Version1_6.Read.Parser.Header.RG.PG, Data.SAM.Version1_6.Read.Parser.Header.RG.PI, Data.SAM.Version1_6.Read.Parser.Header.RG.PL, Data.SAM.Version1_6.Read.Parser.Header.RG.PM, Data.SAM.Version1_6.Read.Parser.Header.RG.PU, Data.SAM.Version1_6.Read.Parser.Header.RG.SM, Data.SAM.Version1_6.Read.Parser.Header.PG.Base, Data.SAM.Version1_6.Read.Parser.Header.PG.ID, Data.SAM.Version1_6.Read.Parser.Header.PG.PN, Data.SAM.Version1_6.Read.Parser.Header.PG.CL, Data.SAM.Version1_6.Read.Parser.Header.PG.PP, Data.SAM.Version1_6.Read.Parser.Header.PG.DS, Data.SAM.Version1_6.Read.Parser.Header.PG.VN, Data.SAM.Version1_6.Read.Parser.Header.CO.Base -- Modules included in this library but not exported. -- other-modules: -- LANGUAGE extensions used by modules in this package. -- other-extensions: -- Other library packages from which modules are imported. build-depends: base ^>=4.17.1.0, ascii >= 1.7.0 && < 1.8, attoparsec >= 0.14.4 && < 0.15, bitvec >= 1.1.4 && < 1.2, bytestring >= 0.11.4 && < 0.12, containers >= 0.6.7 && < 0.7, crypton >= 0.33 && < 0.34, generic-deriving >= 1.14.5 && < 1.15, pcre-heavy >= 1.0.0 && < 1.1, regex-tdfa >= 1.3.2 && < 1.4, streamly >= 0.9.0 && < 0.10, streamly-bytestring >= 0.2.0 && < 0.3, streamly-core >= 0.1.0 && < 0.2 -- Directories containing source files. hs-source-dirs: src -- Base language which the package is written in. default-language: Haskell2010 test-suite hs-samtools-test -- Import common warning flags. import: warnings -- Base language which the package is written in. default-language: Haskell2010 -- Modules included in this executable, other than Main. -- other-modules: -- LANGUAGE extensions used by modules in this package. -- other-extensions: -- The interface type and version of the test suite. type: exitcode-stdio-1.0 -- Directories containing source files. hs-source-dirs: test -- The entrypoint to the test suite. main-is: Main.hs -- Test dependencies. build-depends: base ^>=4.17.1.0, hs-samtools