cabal-version:      3.0
-- The cabal-version field refers to the version of the .cabal specification,
-- and can be different from the cabal-install (the tool) version and the
-- Cabal (the library) version you are using. As such, the Cabal (the library)
-- version used must be equal or greater than the version stated in this field.
-- Starting from the specification version 2.2, the cabal-version field must be
-- the first thing in the cabal file.

-- Initial package description 'hs-samtools' generated by
-- 'cabal init'. For further documentation, see:
--   http://haskell.org/cabal/users-guide/
--
-- The name of the package.
name:               hs-samtools

-- The package version.
-- See the Haskell package versioning policy (PVP) for standards
-- guiding when and how versions should be incremented.
-- https://pvp.haskell.org
-- PVP summary:     +-+------- breaking API changes
--                  | | +----- non-breaking API additions
--                  | | | +--- code changes with no API change
version:            0.4.0.2

-- A short (one-line) description of the package.
synopsis: Read and write SAM, BAM, and CRAM files.

-- A longer description of the package.
description: A SAM, BAM, and CRAM file decoder/encoded along with various related functionality associated with these file formats.

-- The license under which the package is released.
license:            BSD-3-Clause

-- The file containing the license text.
license-file:       LICENSE

-- The package author(s).
author:             Matthew Mosior

-- An email address to which users can send suggestions, bug reports, and patches.
maintainer:         mattm.github@gmail.com

-- A copyright notice.
-- copyright:
category:           Bioinformatics
build-type:         Simple

-- Extra doc files to be distributed with the package, such as a CHANGELOG or a README.
extra-doc-files:    CHANGELOG.md

-- Extra source files to be distributed with the package, such as examples, or a tutorial module.
-- extra-source-files:

common warnings
    ghc-options: -Wall

library
    -- Import common warning flags.
    import:           warnings

    -- Modules exported by the library.
    exposed-modules: Data.SAM.Version1_6.Base,
                     Data.SAM.Version1_6.Alignment,
                     Data.SAM.Version1_6.Alignment.Base,
                     Data.SAM.Version1_6.Alignment.BOPT,
                     Data.SAM.Version1_6.Header, 
                     Data.SAM.Version1_6.Header.CO,
                     Data.SAM.Version1_6.Header.HD,
                     Data.SAM.Version1_6.Header.PG,
                     Data.SAM.Version1_6.Header.RG,
                     Data.SAM.Version1_6.Header.SQ

    -- Modules included in this library but not exported.
    -- other-modules:

    -- LANGUAGE extensions used by modules in this package.
    -- other-extensions:

    -- Other library packages from which modules are imported.
    build-depends:    base             ^>=4.17.1.0,
                      ascii            >= 1.7.0 && < 1.8,
                      bitvec           >= 1.1.4 && < 1.2,
                      bytestring       >= 0.11.4 && < 0.12,
                      containers       >= 0.6.7 && < 0.7,
                      crypton          >= 0.33 && < 0.34,
                      flatparse        >= 0.5.0 && < 0.6,
                      generic-deriving >= 1.14.5 && < 1.15

    -- Directories containing source files.
    hs-source-dirs:   src

    -- Base language which the package is written in.
    default-language: Haskell2010

test-suite hs-samtools-test
    -- Import common warning flags.
    import:           warnings

    -- Base language which the package is written in.
    default-language: Haskell2010

    -- Modules included in this executable, other than Main.
    -- other-modules:

    -- LANGUAGE extensions used by modules in this package.
    -- other-extensions:

    -- The interface type and version of the test suite.
    type:             exitcode-stdio-1.0

    -- Directories containing source files.
    hs-source-dirs:   test

    -- The entrypoint to the test suite.
    main-is:          Main.hs

    -- Test dependencies.
    build-depends:
        base ^>=4.17.1.0,
        hs-samtools