/* -*- mode: C++ -*- */ /* IGraph library. Copyright (C) 2011-2012 Gabor Csardi 334 Harvard street, Cambridge, MA 02139 USA This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA */ // **************************************************************************************************** // *** COPYRIGHT NOTICE ******************************************************************************* // graph.h - graph data structure for hierarchical random graphs // Copyright (C) 2005-2008 Aaron Clauset // // This program is free software; you can redistribute it and/or modify // it under the terms of the GNU General Public License as published by // the Free Software Foundation; either version 2 of the License, or // (at your option) any later version. // // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA // // See http://www.gnu.org/licenses/gpl.txt for more details. // // **************************************************************************************************** // Author : Aaron Clauset ( aaronc@santafe.edu | http://www.santafe.edu/~aaronc/ ) // Collaborators: Cristopher Moore and Mark E.J. Newman // Project : Hierarchical Random Graphs // Location : University of New Mexico, Dept. of Computer Science AND Santa Fe Institute // Created : 8 November 2005 // Modified : 23 December 2007 (cleaned up for public consumption) // // **************************************************************************************************** // // Graph data structure for hierarchical random graphs. The basic structure is an adjacency list of // edges; however, many additional pieces of metadata are stored as well. Each node stores its // external name, its degree and (if assigned) its group index. // // **************************************************************************************************** #ifndef IGRAPH_HRG_GRAPH #define IGRAPH_HRG_GRAPH #include #include #include #include "hrg_rbtree.h" using namespace std; namespace fitHRG { // ******** Basic Structures ********************************************* #ifndef IGRAPH_HRG_EDGE #define IGRAPH_HRG_EDGE class edge { public: int x; // stored integer value (edge terminator) double* h; // (histogram) weights of edge existence double total_weight; // (histogram) total weight observed int obs_count; // number of observations in histogram edge* next; // pointer to next elementd edge(): x(-1), h(0), total_weight(0.0), obs_count(0), next(0) { } ~edge() { if (h != NULL) { delete [] h; } h = NULL; } }; #endif #ifndef IGRAPH_HRG_VERT #define IGRAPH_HRG_VERT class vert { public: string name; // (external) name of vertex int degree; // degree of this vertex vert(): name(""), degree(0) { } ~vert() { } }; #endif // ******** Graph Class with Edge Statistics ***************************** class graph { public: graph(const int, bool predict = false); ~graph(); // add (i,j) to graph bool addLink(const int, const int); // add weight to (i,j)'s histogram bool addAdjacencyObs(const int, const int, const double, const double); // add to obs_count and total_weight void addAdjacencyEnd(); // true if (i,j) is already in graph bool doesLinkExist(const int, const int); // returns degree of vertex i int getDegree(const int); // returns name of vertex i string getName(const int); // returns edge list of vertex i edge* getNeighborList(const int); // return ptr to histogram of edge (i,j) double* getAdjacencyHist(const int, const int); // return average value of adjacency A(i,j) double getAdjacencyAverage(const int, const int); // returns bin_resolution double getBinResolution(); // returns num_bins int getNumBins(); // returns m int numLinks(); // returns n int numNodes(); // returns total_weight double getTotalWeight(); // reset edge (i,j)'s histogram void resetAdjacencyHistogram(const int, const int); // reset all edge histograms void resetAllAdjacencies(); // clear all links from graph void resetLinks(); // allocate edge histograms void setAdjacencyHistograms(const int); // set name of vertex i bool setName(const int, const string); private: bool predict; // do we need prediction? vert* nodes; // list of nodes edge** nodeLink; // linked list of neighbors to vertex edge** nodeLinkTail; // pointers to tail of neighbor list double*** A; // stochastic adjacency matrix for this graph int obs_count; // number of observations in A double total_weight; // total weight added to A int n; // number of vertices int m; // number of directed edges int num_bins; // number of bins in edge histograms double bin_resolution; // width of histogram bin }; } // namespace fitHRG #endif