/* * Copyright 2007 Sandia Corporation. Under the terms of Contract * DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains * certain rights in this software. * * All rights reserved. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are * met: * * * Redistributions of source code must retain the above copyright * notice, this list of conditions and the following disclaimer. * * Redistributions in binary form must reproduce the above copyright * notice, this list of conditions and the following disclaimer in the * documentation and/or other materials provided with the distribution. * * Neither the name of Sandia National Laboratories nor the names of * its contributors may be used to endorse or promote products derived from * this software without specific prior written permission. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS * "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR * A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT * OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED * TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR * PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF * LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING * NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ // The graph class contains the methods necessary to draw the // graph. It calls on the density server class to obtain // position and density information #include "DensityGrid.h" #include "igraph_layout.h" namespace drl { // layout schedule information struct layout_schedule { int iterations; float temperature; float attraction; float damping_mult; time_t time_elapsed; }; class graph { public: // Methods void init_parms ( int rand_seed, float edge_cut, float real_parm ); void init_parms ( const igraph_layout_drl_options_t *options ); void read_parms ( char *parms_file ); void read_real ( char *real_file ); int read_real ( const igraph_matrix_t *real_mat, const igraph_vector_bool_t *fixed); void scan_int ( char *filename ); void read_int ( char *file_name ); void draw_graph ( int int_out, char *coord_file ); int draw_graph (igraph_matrix_t *res); void write_coord ( const char *file_name ); void write_sim ( const char *file_name ); float get_tot_energy ( ); // Con/Decon graph( int proc_id, int tot_procs, char *int_file ); ~graph( ) { } graph( const igraph_t *igraph, const igraph_layout_drl_options_t *options, const igraph_vector_t *weights); private: // Methods int ReCompute ( ); void update_nodes ( ); float Compute_Node_Energy ( int node_ind ); void Solve_Analytic ( int node_ind, float &pos_x, float &pos_y ); void get_positions ( vector &node_indices, float return_positions[2 * MAX_PROCS] ); void update_density ( vector &node_indices, float old_positions[2 * MAX_PROCS], float new_positions[2 * MAX_PROCS] ); void update_node_pos ( int node_ind, float old_positions[2 * MAX_PROCS], float new_positions[2 * MAX_PROCS] ); // MPI information int myid, num_procs; // graph decomposition information int num_nodes; // number of nodes in graph float highest_sim; // highest sim for normalization map id_catalog; // id_catalog[file id] = internal id map > neighbors; // neighbors of nodes on this proc. // graph layout information vector positions; DensityGrid density_server; // original VxOrd information int STAGE, iterations; float temperature, attraction, damping_mult; float min_edges, CUT_END, cut_length_end, cut_off_length, cut_rate; bool first_add, fine_first_add, fineDensity; // scheduling variables layout_schedule liquid; layout_schedule expansion; layout_schedule cooldown; layout_schedule crunch; layout_schedule simmer; // timing statistics time_t start_time, stop_time; // online clustering information int real_iterations; // number of iterations to hold .real input fixed int tot_iterations; int tot_expected_iterations; // for progress bar bool real_fixed; }; } // namespace drl