| Safe Haskell | None |
|---|---|
| Language | Haskell98 |
Bio.PDB.Fasta
Description
Conversion of PDB residue codes to FASTA single-letter sequence codes.
- resname2fastacode :: ByteString -> Char
- fastacode2resname :: Char -> ByteString
- defaultResname :: ByteString
- defaultFastaCode :: Char
- fastaSequence :: Iterable a Residue => a -> [Char]
- fastaGappedSequence :: Iterable a Residue => a -> [Char]
- fastaRecord :: [Char] -> Chain -> [Char]
- fastaGappedRecord :: [Char] -> Chain -> [Char]
Documentation
resname2fastacode :: ByteString -> Char Source #
Dictionary mapping three-letter PDB residue code to a single-letter FASTA code.
fastacode2resname :: Char -> ByteString Source #
Dictionary mapping single-letter FASTA standard aminoacid code to a PDB residue name
defaultResname :: ByteString Source #
Three-letter PDB code for an unknown type of residue.
defaultFastaCode :: Char Source #
One-letter aminoacid code for an unknown type of residue.