fasta-0.5.1.3: A simple, mindless parser for fasta files.

Safe HaskellSafe-Inferred
LanguageHaskell98

Data.Fasta.String.Parse

Description

Collection of functions for the parsing of a fasta file. Uses the string type.

Synopsis

Documentation

parseFasta :: String -> [FastaSequence] Source

Parse a standard fasta file into string sequences

parseCLIPFasta :: String -> CloneMap Source

Parse a CLIP fasta file into string sequences

removeNs :: [FastaSequence] -> [FastaSequence] Source

Remove Ns from a collection of sequences

removeCLIPNs :: CloneMap -> CloneMap Source

Remove Ns from a collection of CLIP fasta sequences