| Safe Haskell | Safe-Inferred |
|---|---|
| Language | Haskell98 |
Data.Fasta.String.Parse
Description
Collection of functions for the parsing of a fasta file. Uses the string type.
- parseFasta :: String -> [FastaSequence]
- parseCLIPFasta :: String -> CloneMap
- removeNs :: [FastaSequence] -> [FastaSequence]
- removeCLIPNs :: CloneMap -> CloneMap
Documentation
parseFasta :: String -> [FastaSequence] Source
Parse a standard fasta file into string sequences
parseCLIPFasta :: String -> CloneMap Source
Parse a CLIP fasta file into string sequences
removeNs :: [FastaSequence] -> [FastaSequence] Source
Remove Ns from a collection of sequences
removeCLIPNs :: CloneMap -> CloneMap Source
Remove Ns from a collection of CLIP fasta sequences