cabal-version: 1.12
name: evomod
version: 0.1.0.2
license: GPL-3
license-file: LICENSE
copyright: Dominik Schrempf (2018)
maintainer: dominik.schrempf@gmail.com
author: Dominik Schrempf
homepage: https://github.com/dschrempf/evomod#readme
bug-reports: https://github.com/dschrempf/evomod/issues
synopsis: Read and modify molecular sequence data in a reproducible way.
description:
    Please see the README on GitHub at <https://github.com/dschrempf/evomod
category: Bioinformatics
build-type: Simple
extra-source-files:
    README.md
    ChangeLog.md

source-repository head
    type: git
    location: https://github.com/dschrempf/evomod

library
    exposed-modules:
        EvoMod.Data.Alphabet
        EvoMod.Data.AminoAcid
        EvoMod.Data.BoundaryMutationModel.State
        EvoMod.Data.Character
        EvoMod.Data.Codon
        EvoMod.Data.MultiSequenceAlignment
        EvoMod.Data.Nucleotide
        EvoMod.Data.Sequence
        EvoMod.Data.StateSpace
        EvoMod.Defaults
        EvoMod.Filter
        EvoMod.IO.CountsFile
        EvoMod.IO.Fasta
        EvoMod.Tools
    hs-source-dirs: src
    other-modules:
        Paths_evomod
    default-language: Haskell2010
    ghc-options: -Wall
    build-depends:
        base >=4.12.0.0 && <4.13,
        bytestring >=0.10.8.2 && <0.11,
        containers >=0.6.0.1 && <0.7,
        deepseq >=1.4.4.0 && <1.5,
        hspec >=2.6.0 && <2.7,
        lens ==4.17.*,
        math-functions >=0.3.1.0 && <0.4,
        megaparsec >=7.0.1 && <7.1,
        optparse-applicative >=0.14.3.0 && <0.15,
        vector >=0.12.0.2 && <0.13,
        vector-th-unbox >=0.2.1.6 && <0.3,
        word8 >=0.1.3 && <0.2,
        zlib >=0.6.2 && <0.7

executable evomod-seq
    main-is: Main.hs
    hs-source-dirs: app/EvoModSeq
    other-modules:
        ArgParse
        Paths_evomod
    default-language: Haskell2010
    ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -eventlog
    build-depends:
        base >=4.12.0.0 && <4.13,
        bytestring >=0.10.8.2 && <0.11,
        containers >=0.6.0.1 && <0.7,
        deepseq >=1.4.4.0 && <1.5,
        evomod -any,
        hspec >=2.6.0 && <2.7,
        lens ==4.17.*,
        math-functions >=0.3.1.0 && <0.4,
        megaparsec >=7.0.1 && <7.1,
        optparse-applicative >=0.14.3.0 && <0.15,
        vector >=0.12.0.2 && <0.13,
        vector-th-unbox >=0.2.1.6 && <0.3,
        word8 >=0.1.3 && <0.2,
        zlib >=0.6.2 && <0.7

test-suite evomod-test
    type: exitcode-stdio-1.0
    main-is: Spec.hs
    hs-source-dirs: test
    other-modules:
        Paths_evomod
    default-language: Haskell2010
    ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N
    build-depends:
        base >=4.12.0.0 && <4.13,
        bytestring >=0.10.8.2 && <0.11,
        containers >=0.6.0.1 && <0.7,
        deepseq >=1.4.4.0 && <1.5,
        evomod -any,
        hspec >=2.6.0 && <2.7,
        lens ==4.17.*,
        math-functions >=0.3.1.0 && <0.4,
        megaparsec >=7.0.1 && <7.1,
        optparse-applicative >=0.14.3.0 && <0.15,
        vector >=0.12.0.2 && <0.13,
        vector-th-unbox >=0.2.1.6 && <0.3,
        word8 >=0.1.3 && <0.2,
        zlib >=0.6.2 && <0.7