Copyright	(c) Dominik Schrempf 2021
License	GPL-3.0-or-later
Maintainer	dominik.schrempf@gmail.com
Stability	unstable
Portability	portable
Safe Haskell	None
Language	Haskell2010

ELynx.Tree.Support

Contents

Non-negative support value
Functions on trees

Description

Creation date: Thu Jun 13 14:06:45 2019.

Synopsis

data Support
toSupport :: Double -> Either String Support
toSupportUnsafe :: Double -> Support
class HasMaybeSupport e where
- getMaybeSupport :: e -> Maybe Support
class HasMaybeSupport e => HasSupport e where
- getSupport :: e -> Support
- setSupport :: Support -> e -> e
- modifySupport :: (Support -> Support) -> e -> e
normalizeBranchSupport :: HasSupport e => Tree e a -> Tree e a
collapse :: (Eq e, Eq a, HasSupport e) => Support -> Tree e a -> Tree e a

Non-negative support value

data Support Source #

Non-negative support value.

However, non-negativity is only checked with toSupport, and negative values can be obtained using the Num and related instances.

Instances

Instances details

Enum Support Source #
Instance details Defined in ELynx.Tree.Support Methods succ :: Support -> Support # pred :: Support -> Support # toEnum :: Int -> Support # fromEnum :: Support -> Int # enumFrom :: Support -> [Support] # enumFromThen :: Support -> Support -> [Support] # enumFromTo :: Support -> Support -> [Support] # enumFromThenTo :: Support -> Support -> Support -> [Support] #
Eq Support Source #
Instance details Defined in ELynx.Tree.Support Methods (==) :: Support -> Support -> Bool # (/=) :: Support -> Support -> Bool #
Floating Support Source #
Instance details Defined in ELynx.Tree.Support Methods pi :: Support # exp :: Support -> Support # log :: Support -> Support # sqrt :: Support -> Support # (**) :: Support -> Support -> Support # logBase :: Support -> Support -> Support # sin :: Support -> Support # cos :: Support -> Support # tan :: Support -> Support # asin :: Support -> Support # acos :: Support -> Support # atan :: Support -> Support # sinh :: Support -> Support # cosh :: Support -> Support # tanh :: Support -> Support # asinh :: Support -> Support # acosh :: Support -> Support # atanh :: Support -> Support # log1p :: Support -> Support # expm1 :: Support -> Support # log1pexp :: Support -> Support # log1mexp :: Support -> Support #
Fractional Support Source #
Instance details Defined in ELynx.Tree.Support Methods (/) :: Support -> Support -> Support # recip :: Support -> Support # fromRational :: Rational -> Support #
Num Support Source #
Instance details Defined in ELynx.Tree.Support Methods (+) :: Support -> Support -> Support # (-) :: Support -> Support -> Support # (*) :: Support -> Support -> Support # negate :: Support -> Support # abs :: Support -> Support # signum :: Support -> Support # fromInteger :: Integer -> Support #
Ord Support Source #
Instance details Defined in ELynx.Tree.Support Methods compare :: Support -> Support -> Ordering # (<) :: Support -> Support -> Bool # (<=) :: Support -> Support -> Bool # (>) :: Support -> Support -> Bool # (>=) :: Support -> Support -> Bool # max :: Support -> Support -> Support # min :: Support -> Support -> Support #
Read Support Source #
Instance details Defined in ELynx.Tree.Support Methods readsPrec :: Int -> ReadS Support # readList :: ReadS [Support] # readPrec :: ReadPrec Support # readListPrec :: ReadPrec [Support] #
Real Support Source #
Instance details Defined in ELynx.Tree.Support Methods toRational :: Support -> Rational #
RealFloat Support Source #
Instance details Defined in ELynx.Tree.Support Methods floatRadix :: Support -> Integer # floatDigits :: Support -> Int # floatRange :: Support -> (Int, Int) # decodeFloat :: Support -> (Integer, Int) # encodeFloat :: Integer -> Int -> Support # exponent :: Support -> Int # significand :: Support -> Support # scaleFloat :: Int -> Support -> Support # isNaN :: Support -> Bool # isInfinite :: Support -> Bool # isDenormalized :: Support -> Bool # isNegativeZero :: Support -> Bool # isIEEE :: Support -> Bool # atan2 :: Support -> Support -> Support #
RealFrac Support Source #
Instance details Defined in ELynx.Tree.Support Methods properFraction :: Integral b => Support -> (b, Support) # truncate :: Integral b => Support -> b # round :: Integral b => Support -> b # ceiling :: Integral b => Support -> b # floor :: Integral b => Support -> b #
Show Support Source #
Instance details Defined in ELynx.Tree.Support Methods showsPrec :: Int -> Support -> ShowS # show :: Support -> String # showList :: [Support] -> ShowS #
Generic Support Source #
Instance details Defined in ELynx.Tree.Support Associated Types type Rep Support :: Type -> Type # Methods from :: Support -> Rep Support x # to :: Rep Support x -> Support #
Semigroup Support Source #
Instance details Defined in ELynx.Tree.Support Methods (<>) :: Support -> Support -> Support # sconcat :: NonEmpty Support -> Support # stimes :: Integral b => b -> Support -> Support #
NFData Support Source #
Instance details Defined in ELynx.Tree.Support Methods rnf :: Support -> () #
ToJSON Support Source #
Instance details Defined in ELynx.Tree.Support Methods toJSON :: Support -> Value # toEncoding :: Support -> Encoding # toJSONList :: [Support] -> Value # toEncodingList :: [Support] -> Encoding #
FromJSON Support Source #
Instance details Defined in ELynx.Tree.Support Methods parseJSON :: Value -> Parser Support # parseJSONList :: Value -> Parser [Support] #
Splittable Support Source #
Instance details Defined in ELynx.Tree.Support Methods split :: Support -> Support Source #
HasMaybeLength Support Source #
Instance details Defined in ELynx.Tree.Export.Newick Methods getMaybeLength :: Support -> Maybe Length Source #
HasSupport Support Source #
Instance details Defined in ELynx.Tree.Support Methods getSupport :: Support -> Support Source # setSupport :: Support -> Support -> Support Source # modifySupport :: (Support -> Support) -> Support -> Support Source #
HasMaybeSupport Support Source #
Instance details Defined in ELynx.Tree.Support Methods getMaybeSupport :: Support -> Maybe Support Source #
type Rep Support Source #
Instance details Defined in ELynx.Tree.Support type Rep Support = D1 ('MetaData "Support" "ELynx.Tree.Support" "elynx-tree-0.6.0.0-FQkEU9t6m33732ommPyIXg" 'True) (C1 ('MetaCons "Support" 'PrefixI 'True) (S1 ('MetaSel ('Just "fromSupport") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Double)))

toSupport :: Double -> Either String Support Source #

Return Left if negative.

toSupportUnsafe :: Double -> Support Source #

Do not check if value is negative.

class HasMaybeSupport e where Source #

Class of data types that may have a support value.

Methods

getMaybeSupport :: e -> Maybe Support Source #

Instances

Instances details

HasMaybeSupport () Source #
Instance details Defined in ELynx.Tree.Support Methods getMaybeSupport :: () -> Maybe Support Source #
HasMaybeSupport Length Source #
Instance details Defined in ELynx.Tree.Export.Newick Methods getMaybeSupport :: Length -> Maybe Support Source #
HasMaybeSupport Support Source #
Instance details Defined in ELynx.Tree.Support Methods getMaybeSupport :: Support -> Maybe Support Source #
HasMaybeSupport PhyloExplicit Source #
Instance details Defined in ELynx.Tree.Phylogeny Methods getMaybeSupport :: PhyloExplicit -> Maybe Support Source #
HasMaybeSupport Phylo Source #
Instance details Defined in ELynx.Tree.Phylogeny Methods getMaybeSupport :: Phylo -> Maybe Support Source #

class HasMaybeSupport e => HasSupport e where Source #

Class of data types with measurable and modifiable support values.

Methods

getSupport :: e -> Support Source #

setSupport :: Support -> e -> e Source #

modifySupport :: (Support -> Support) -> e -> e Source #

Instances

Instances details

HasSupport Support Source #
Instance details Defined in ELynx.Tree.Support Methods getSupport :: Support -> Support Source # setSupport :: Support -> Support -> Support Source # modifySupport :: (Support -> Support) -> Support -> Support Source #
HasSupport PhyloExplicit Source #
Instance details Defined in ELynx.Tree.Phylogeny Methods getSupport :: PhyloExplicit -> Support Source # setSupport :: Support -> PhyloExplicit -> PhyloExplicit Source # modifySupport :: (Support -> Support) -> PhyloExplicit -> PhyloExplicit Source #

Functions on trees

normalizeBranchSupport :: HasSupport e => Tree e a -> Tree e a Source #

Normalize branch support values. The maximum branch support value will be set to 1.0.

collapse :: (Eq e, Eq a, HasSupport e) => Support -> Tree e a -> Tree e a Source #

Collapse branches with support lower than given value.

The branch and node labels of the collapsed branches are discarded.