Copyright	(c) Dominik Schrempf 2021
License	GPL-3.0-or-later
Maintainer	dominik.schrempf@gmail.com
Stability	unstable
Portability	portable
Safe Haskell	None
Language	Haskell2010

ELynx.Tree.Distribution.BirthDeathCritical

Description

Creation date: Tue Feb 13 13:16:18 2018.

See Gernhard, T. (2008). The conditioned reconstructed process. Journal of Theoretical Biology, 253(4), 769–778. http://doi.org/10.1016/j.jtbi.2008.04.005.

Distribution of the values of the point process such that it corresponds to reconstructed trees under the birth and death process; critical birth and death process with lambda=mu.

Synopsis

data BirthDeathCriticalDistribution = BDCD {
- bdcdTOr :: Time
- bdcdLa :: Rate
}
cumulative :: BirthDeathCriticalDistribution -> Time -> Double
density :: BirthDeathCriticalDistribution -> Time -> Double
quantile :: BirthDeathCriticalDistribution -> Double -> Time

Documentation

data BirthDeathCriticalDistribution Source #

Distribution of the values of the point process such that it corresponds to a reconstructed tree of the birth and death process.

Constructors

BDCD
Fields bdcdTOr :: Time Time to origin of the tree. bdcdLa :: Rate Birth and death rate.

Instances

Instances details

Eq BirthDeathCriticalDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeathCritical Methods (==) :: BirthDeathCriticalDistribution -> BirthDeathCriticalDistribution -> Bool # (/=) :: BirthDeathCriticalDistribution -> BirthDeathCriticalDistribution -> Bool #
Data BirthDeathCriticalDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeathCritical Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> BirthDeathCriticalDistribution -> c BirthDeathCriticalDistribution # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c BirthDeathCriticalDistribution # toConstr :: BirthDeathCriticalDistribution -> Constr # dataTypeOf :: BirthDeathCriticalDistribution -> DataType # dataCast1 :: Typeable t => (forall d. Data d => c (t d)) -> Maybe (c BirthDeathCriticalDistribution) # dataCast2 :: Typeable t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c BirthDeathCriticalDistribution) # gmapT :: (forall b. Data b => b -> b) -> BirthDeathCriticalDistribution -> BirthDeathCriticalDistribution # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> BirthDeathCriticalDistribution -> r # gmapQr :: forall r r'. (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> BirthDeathCriticalDistribution -> r # gmapQ :: (forall d. Data d => d -> u) -> BirthDeathCriticalDistribution -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> BirthDeathCriticalDistribution -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> BirthDeathCriticalDistribution -> m BirthDeathCriticalDistribution # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> BirthDeathCriticalDistribution -> m BirthDeathCriticalDistribution # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> BirthDeathCriticalDistribution -> m BirthDeathCriticalDistribution #
Generic BirthDeathCriticalDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeathCritical Associated Types type Rep BirthDeathCriticalDistribution :: Type -> Type # Methods from :: BirthDeathCriticalDistribution -> Rep BirthDeathCriticalDistribution x # to :: Rep BirthDeathCriticalDistribution x -> BirthDeathCriticalDistribution #
Distribution BirthDeathCriticalDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeathCritical Methods cumulative :: BirthDeathCriticalDistribution -> Double -> Double # complCumulative :: BirthDeathCriticalDistribution -> Double -> Double #
ContDistr BirthDeathCriticalDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeathCritical Methods density :: BirthDeathCriticalDistribution -> Double -> Double # quantile :: BirthDeathCriticalDistribution -> Double -> Double # complQuantile :: BirthDeathCriticalDistribution -> Double -> Double # logDensity :: BirthDeathCriticalDistribution -> Double -> Double #
ContGen BirthDeathCriticalDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeathCritical Methods genContVar :: PrimMonad m => BirthDeathCriticalDistribution -> Gen (PrimState m) -> m Double #
type Rep BirthDeathCriticalDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeathCritical type Rep BirthDeathCriticalDistribution = D1 ('MetaData "BirthDeathCriticalDistribution" "ELynx.Tree.Distribution.BirthDeathCritical" "elynx-tree-0.6.0.0-FQkEU9t6m33732ommPyIXg" 'False) (C1 ('MetaCons "BDCD" 'PrefixI 'True) (S1 ('MetaSel ('Just "bdcdTOr") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Time) :*: S1 ('MetaSel ('Just "bdcdLa") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Rate)))

cumulative :: BirthDeathCriticalDistribution -> Time -> Double Source #

Cumulative distribution function section 2.1.2, second formula.

density :: BirthDeathCriticalDistribution -> Time -> Double Source #

Density function section 2.1.2, first formula.

quantile :: BirthDeathCriticalDistribution -> Double -> Time Source #

Inverted cumulative probability distribution cumulative. See also ContDistr.