cabal-version: 1.12
name: elynx-tree
version: 0.2.1
license: GPL-3
license-file: LICENSE
copyright: Dominik Schrempf (2020)
maintainer: dominik.schrempf@gmail.com
author: Dominik Schrempf
homepage: https://github.com/dschrempf/elynx#readme
bug-reports: https://github.com/dschrempf/elynx/issues
synopsis: Handle phylogenetic trees
description:
    Examine, compare, and simulate phylogenetic trees in a reproducible way. Please see the README on GitHub at <https://github.com/dschrempf/elynx>.
category: Bioinformatics
build-type: Simple
extra-source-files:
    README.md
    ChangeLog.md

source-repository head
    type: git
    location: https://github.com/dschrempf/elynx

library
    exposed-modules:
        ELynx.Data.Tree
        ELynx.Data.Tree.Bipartition
        ELynx.Data.Tree.BranchSupportTree
        ELynx.Data.Tree.Distance
        ELynx.Data.Tree.MeasurableTree
        ELynx.Data.Tree.Multipartition
        ELynx.Data.Tree.NamedTree
        ELynx.Data.Tree.PhyloTree
        ELynx.Data.Tree.SubSample
        ELynx.Data.Tree.SumStat
        ELynx.Data.Tree.Tree
        ELynx.Distribution.BirthDeath
        ELynx.Distribution.BirthDeathCritical
        ELynx.Distribution.BirthDeathCriticalNoTime
        ELynx.Distribution.BirthDeathNearlyCritical
        ELynx.Distribution.CoalescentContinuous
        ELynx.Distribution.TimeOfOrigin
        ELynx.Distribution.TimeOfOriginNearCritical
        ELynx.Distribution.Types
        ELynx.Export.Tree.Newick
        ELynx.Import.Tree.Newick
        ELynx.Simulate.Coalescent
        ELynx.Simulate.PointProcess
    hs-source-dirs: src
    other-modules:
        Paths_elynx_tree
    default-language: Haskell2010
    ghc-options: -Wall -fllvm
    build-depends:
        base >=4.13.0.0 && <4.14,
        bytestring >=0.10.10.0 && <0.11,
        containers >=0.6.2.1 && <0.7,
        elynx-tools >=0.2.1 && <0.3,
        math-functions >=0.3.3.0 && <0.4,
        megaparsec >=8.0.0 && <8.1,
        mwc-random >=0.14.0.0 && <0.15,
        primitive >=0.7.0.1 && <0.8,
        statistics >=0.15.2.0 && <0.16

test-suite tree-test
    type: exitcode-stdio-1.0
    main-is: Spec.hs
    hs-source-dirs: test
    other-modules:
        ELynx.Data.Tree.BipartitionSpec
        ELynx.Data.Tree.DistanceSpec
        ELynx.Data.Tree.MultipartitionSpec
        ELynx.Data.Tree.PhyloTreeArbitraryInstance
        ELynx.Data.Tree.TreeSpec
        ELynx.Export.Tree.NewickSpec
        ELynx.Import.Tree.NewickSpec
        Paths_elynx_tree
    default-language: Haskell2010
    ghc-options: -Wall -fllvm -threaded -rtsopts -with-rtsopts=-N
    build-depends:
        QuickCheck >=2.13.2 && <2.14,
        base >=4.13.0.0 && <4.14,
        bytestring >=0.10.10.0 && <0.11,
        containers >=0.6.2.1 && <0.7,
        elynx-tools >=0.2.1 && <0.3,
        elynx-tree -any,
        hspec >=2.7.1 && <2.8,
        hspec-megaparsec >=2.1.0 && <2.2,
        math-functions >=0.3.3.0 && <0.4,
        megaparsec >=8.0.0 && <8.1,
        mwc-random >=0.14.0.0 && <0.15,
        primitive >=0.7.0.1 && <0.8,
        quickcheck-instances >=0.3.22 && <0.4,
        statistics >=0.15.2.0 && <0.16

benchmark tree-bench
    type: exitcode-stdio-1.0
    main-is: Bench.hs
    hs-source-dirs: bench
    other-modules:
        Paths_elynx_tree
    default-language: Haskell2010
    ghc-options: -Wall -fllvm -threaded -rtsopts -with-rtsopts=-N
    build-depends:
        base >=4.13.0.0 && <4.14,
        bytestring >=0.10.10.0 && <0.11,
        containers >=0.6.2.1 && <0.7,
        criterion >=1.5.6.2 && <1.6,
        elynx-tools >=0.2.1 && <0.3,
        elynx-tree -any,
        math-functions >=0.3.3.0 && <0.4,
        megaparsec >=8.0.0 && <8.1,
        mwc-random >=0.14.0.0 && <0.15,
        primitive >=0.7.0.1 && <0.8,
        statistics >=0.15.2.0 && <0.16