Copyright	(c) Dominik Schrempf 2021
License	GPL-3.0-or-later
Maintainer	dominik.schrempf@gmail.com
Stability	unstable
Portability	portable
Safe Haskell	None
Language	Haskell2010

ELynx.Data.Character.Nucleotide

Description

Creation date: Thu Oct 4 18:26:35 2018.

See header of Alphabet.

Symbol  Description  Bases represented  Complement
------  -----------  -----------------  ----------
A       Adenine      A                  T
C       Cytosine        C               G
G       Guanine            G            C
T       Thymine               T         A

Synopsis

data Nucleotide
- = A
- | C
- | G
- | T

Documentation

data Nucleotide Source #

Nucleotides.

Constructors

A
C
G
T

Instances

Instances details

Bounded Nucleotide Source #
Instance details Defined in ELynx.Data.Character.Nucleotide Methods minBound :: Nucleotide # maxBound :: Nucleotide #
Enum Nucleotide Source #
Instance details Defined in ELynx.Data.Character.Nucleotide Methods succ :: Nucleotide -> Nucleotide # pred :: Nucleotide -> Nucleotide # toEnum :: Int -> Nucleotide # fromEnum :: Nucleotide -> Int # enumFrom :: Nucleotide -> [Nucleotide] # enumFromThen :: Nucleotide -> Nucleotide -> [Nucleotide] # enumFromTo :: Nucleotide -> Nucleotide -> [Nucleotide] # enumFromThenTo :: Nucleotide -> Nucleotide -> Nucleotide -> [Nucleotide] #
Eq Nucleotide Source #
Instance details Defined in ELynx.Data.Character.Nucleotide Methods (==) :: Nucleotide -> Nucleotide -> Bool # (/=) :: Nucleotide -> Nucleotide -> Bool #
Ord Nucleotide Source #
Instance details Defined in ELynx.Data.Character.Nucleotide Methods compare :: Nucleotide -> Nucleotide -> Ordering # (<) :: Nucleotide -> Nucleotide -> Bool # (<=) :: Nucleotide -> Nucleotide -> Bool # (>) :: Nucleotide -> Nucleotide -> Bool # (>=) :: Nucleotide -> Nucleotide -> Bool # max :: Nucleotide -> Nucleotide -> Nucleotide # min :: Nucleotide -> Nucleotide -> Nucleotide #
Read Nucleotide Source #
Instance details Defined in ELynx.Data.Character.Nucleotide Methods readsPrec :: Int -> ReadS Nucleotide # readList :: ReadS [Nucleotide] # readPrec :: ReadPrec Nucleotide # readListPrec :: ReadPrec [Nucleotide] #
Show Nucleotide Source #
Instance details Defined in ELynx.Data.Character.Nucleotide Methods showsPrec :: Int -> Nucleotide -> ShowS # show :: Nucleotide -> String # showList :: [Nucleotide] -> ShowS #
Unbox Nucleotide Source #
Instance details Defined in ELynx.Data.Character.Nucleotide
Character Nucleotide Source #
Instance details Defined in ELynx.Data.Character.Nucleotide Methods toWord :: Nucleotide -> Word8 Source # fromWord :: Word8 -> Nucleotide Source #
Vector Vector Nucleotide Source #
Instance details Defined in ELynx.Data.Character.Nucleotide Methods basicUnsafeFreeze :: PrimMonad m => Mutable Vector (PrimState m) Nucleotide -> m (Vector Nucleotide) # basicUnsafeThaw :: PrimMonad m => Vector Nucleotide -> m (Mutable Vector (PrimState m) Nucleotide) # basicLength :: Vector Nucleotide -> Int # basicUnsafeSlice :: Int -> Int -> Vector Nucleotide -> Vector Nucleotide # basicUnsafeIndexM :: Monad m => Vector Nucleotide -> Int -> m Nucleotide # basicUnsafeCopy :: PrimMonad m => Mutable Vector (PrimState m) Nucleotide -> Vector Nucleotide -> m () # elemseq :: Vector Nucleotide -> Nucleotide -> b -> b #
MVector MVector Nucleotide Source #
Instance details Defined in ELynx.Data.Character.Nucleotide Methods basicLength :: MVector s Nucleotide -> Int # basicUnsafeSlice :: Int -> Int -> MVector s Nucleotide -> MVector s Nucleotide # basicOverlaps :: MVector s Nucleotide -> MVector s Nucleotide -> Bool # basicUnsafeNew :: PrimMonad m => Int -> m (MVector (PrimState m) Nucleotide) # basicInitialize :: PrimMonad m => MVector (PrimState m) Nucleotide -> m () # basicUnsafeReplicate :: PrimMonad m => Int -> Nucleotide -> m (MVector (PrimState m) Nucleotide) # basicUnsafeRead :: PrimMonad m => MVector (PrimState m) Nucleotide -> Int -> m Nucleotide # basicUnsafeWrite :: PrimMonad m => MVector (PrimState m) Nucleotide -> Int -> Nucleotide -> m () # basicClear :: PrimMonad m => MVector (PrimState m) Nucleotide -> m () # basicSet :: PrimMonad m => MVector (PrimState m) Nucleotide -> Nucleotide -> m () # basicUnsafeCopy :: PrimMonad m => MVector (PrimState m) Nucleotide -> MVector (PrimState m) Nucleotide -> m () # basicUnsafeMove :: PrimMonad m => MVector (PrimState m) Nucleotide -> MVector (PrimState m) Nucleotide -> m () # basicUnsafeGrow :: PrimMonad m => MVector (PrimState m) Nucleotide -> Int -> m (MVector (PrimState m) Nucleotide) #
newtype Vector Nucleotide Source #
Instance details Defined in ELynx.Data.Character.Nucleotide newtype Vector Nucleotide = V_Nucleotide (Vector Word8)
newtype MVector s Nucleotide Source #
Instance details Defined in ELynx.Data.Character.Nucleotide newtype MVector s Nucleotide = MV_Nucleotide (MVector s Word8)