cabal-version:      2.2
name:               elynx-seq
version:            0.5.1.0
license:            GPL-3.0-or-later
license-file:       LICENSE
copyright:          Dominik Schrempf (2020)
maintainer:         dominik.schrempf@gmail.com
author:             Dominik Schrempf
homepage:           https://github.com/dschrempf/elynx#readme
bug-reports:        https://github.com/dschrempf/elynx/issues
synopsis:           Handle molecular sequences
description:
    Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on GitHub at <https://github.com/dschrempf/elynx>.

category:           Bioinformatics
build-type:         Simple
extra-source-files:
    README.md
    ChangeLog.md
    data/AminoAcid.fasta
    data/Erroneous.fasta
    data/NucleotideDifferentLength.fasta
    data/NucleotideDifferentLengthTrimmed.fasta
    data/Nucleotide.fasta
    data/NucleotideIUPAC.fasta
    data/TranslateMitochondrialVertebrateDNA.fasta
    data/TranslateMitochondrialVertebrateProtein.fasta

source-repository head
    type:     git
    location: https://github.com/dschrempf/elynx

library
    exposed-modules:
        ELynx.Data.Alphabet.Alphabet
        ELynx.Data.Alphabet.Character
        ELynx.Data.Alphabet.DistributionDiversity
        ELynx.Data.Character.AminoAcid
        ELynx.Data.Character.AminoAcidI
        ELynx.Data.Character.AminoAcidS
        ELynx.Data.Character.AminoAcidX
        ELynx.Data.Character.Character
        ELynx.Data.Character.Codon
        ELynx.Data.Character.Nucleotide
        ELynx.Data.Character.NucleotideI
        ELynx.Data.Character.NucleotideX
        ELynx.Data.Sequence.Alignment
        ELynx.Data.Sequence.Defaults
        ELynx.Data.Sequence.Distance
        ELynx.Data.Sequence.Sequence
        ELynx.Data.Sequence.Translate
        ELynx.Export.Sequence.Fasta
        ELynx.Import.Sequence.Fasta

    hs-source-dirs:   src
    other-modules:    Paths_elynx_seq
    autogen-modules:  Paths_elynx_seq
    default-language: Haskell2010
    ghc-options:      -Wall -Wunused-packages
    build-depends:
        aeson >=1.5.6.0,
        attoparsec >=0.13.2.5,
        base >=4.7 && <5,
        bytestring >=0.10.12.0,
        containers >=0.6.2.1,
        matrices >=0.5.0,
        mwc-random >=0.14.0.0,
        parallel >=3.2.2.0,
        primitive >=0.7.1.0,
        vector >=0.12.3.0,
        vector-th-unbox >=0.2.1.9,
        word8 >=0.1.3

test-suite seq-test
    type:             exitcode-stdio-1.0
    main-is:          Spec.hs
    hs-source-dirs:   test
    other-modules:
        ELynx.Data.Alphabet.DistributionDiversitySpec
        ELynx.Data.Sequence.AlignmentSpec
        ELynx.Data.Sequence.SequenceSpec
        ELynx.Data.Sequence.TranslateSpec
        ELynx.Export.Sequence.FastaSpec
        ELynx.Import.Sequence.FastaSpec
        Paths_elynx_seq

    default-language: Haskell2010
    ghc-options:      -Wall -Wunused-packages
    build-depends:
        base >=4.7 && <5,
        bytestring >=0.10.12.0,
        elynx-seq -any,
        elynx-tools >=0.5.1.0,
        hspec >=2.7.10,
        matrices >=0.5.0,
        vector >=0.12.3.0