cabal-version: 2.2 name: elynx-markov version: 0.5.0.2 license: GPL-3.0-or-later license-file: LICENSE copyright: Dominik Schrempf (2020) maintainer: dominik.schrempf@gmail.com author: Dominik Schrempf homepage: https://github.com/dschrempf/elynx#readme bug-reports: https://github.com/dschrempf/elynx/issues synopsis: Simulate molecular sequences along trees description: Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on GitHub at . category: Bioinformatics build-type: Simple extra-source-files: README.md ChangeLog.md data/EDMDistsIQTREE.nex data/EDMDistsPhylobayes.txt data/HSSPMany.siteprofiles data/HSSPSingle.siteprofiles source-repository head type: git location: https://github.com/dschrempf/elynx library exposed-modules: ELynx.Data.MarkovProcess.AminoAcid ELynx.Data.MarkovProcess.CXXModels ELynx.Data.MarkovProcess.CXXModelsData ELynx.Data.MarkovProcess.GammaRateHeterogeneity ELynx.Data.MarkovProcess.MixtureModel ELynx.Data.MarkovProcess.Nucleotide ELynx.Data.MarkovProcess.PhyloModel ELynx.Data.MarkovProcess.RateMatrix ELynx.Data.MarkovProcess.SubstitutionModel ELynx.Import.MarkovProcess.EDMModelPhylobayes ELynx.Import.MarkovProcess.SiteprofilesPhylobayes ELynx.Simulate.MarkovProcess ELynx.Simulate.MarkovProcessAlongTree hs-source-dirs: src other-modules: Paths_elynx_markov autogen-modules: Paths_elynx_markov default-language: Haskell2010 ghc-options: -Wall -Wunused-packages build-depends: async >=2.2.2, attoparsec >=0.13.2.5, base >=4.7 && <5, bytestring >=0.10.12.0, containers >=0.6.2.1, elynx-seq >=0.5.0.2, hmatrix >=0.20.1, integration >=0.2.1, math-functions >=0.3.4.1, mwc-random >=0.14.0.0, primitive >=0.7.1.0, statistics >=0.15.2.0, vector >=0.12.2.0 test-suite markov-test type: exitcode-stdio-1.0 main-is: Spec.hs hs-source-dirs: test other-modules: ELynx.Data.MarkovProcess.AminoAcidSpec ELynx.Data.MarkovProcess.NucleotideSpec ELynx.Data.MarkovProcess.RateMatrixSpec ELynx.Import.MarkovProcess.EDMModelPhylobayesSpec ELynx.Import.MarkovProcess.SiteprofilesPhylobayesSpec ELynx.Simulate.MarkovProcessAlongTreeSpec Paths_elynx_markov default-language: Haskell2010 ghc-options: -Wall -Wunused-packages build-depends: base >=4.7 && <5, containers >=0.6.2.1, elynx-markov -any, elynx-tools >=0.5.0.2, hmatrix >=0.20.1, hspec >=2.7.8, mwc-random >=0.14.0.0, vector >=0.12.2.0 benchmark markov-bench type: exitcode-stdio-1.0 main-is: Bench.hs hs-source-dirs: bench default-language: Haskell2010 ghc-options: -Wall -Wunused-packages build-depends: base >=4.14.1.0