| Copyright | (c) Dominik Schrempf 2020 |
|---|---|
| License | GPL-3.0-or-later |
| Maintainer | dominik.schrempf@gmail.com |
| Stability | unstable |
| Portability | portable |
| Safe Haskell | None |
| Language | Haskell2010 |
ELynx.Data.MarkovProcess.AminoAcid
Description
Creation date: Tue Jan 29 09:29:19 2019.
The order of amino acids is alphabetic.
Synopsis
- lg :: SubstitutionModel
- lgCustom :: Maybe String -> StationaryDistribution -> SubstitutionModel
- wag :: SubstitutionModel
- wagCustom :: Maybe String -> StationaryDistribution -> SubstitutionModel
- poisson :: SubstitutionModel
- poissonCustom :: Maybe String -> StationaryDistribution -> SubstitutionModel
- gtr20 :: [Double] -> StationaryDistribution -> SubstitutionModel
Documentation
lg :: SubstitutionModel Source #
LG substitution model.
lgCustom :: Maybe String -> StationaryDistribution -> SubstitutionModel Source #
LG substitution model with maybe a name and a custom stationary distribution.
wag :: SubstitutionModel Source #
LG substitution model.
wagCustom :: Maybe String -> StationaryDistribution -> SubstitutionModel Source #
LG substitution model with maybe a name and a custom stationary distribution.
poisson :: SubstitutionModel Source #
Poisson substitution model.
poissonCustom :: Maybe String -> StationaryDistribution -> SubstitutionModel Source #
Poisson substitution model with maybe a name and a custom stationary distribution.
gtr20 :: [Double] -> StationaryDistribution -> SubstitutionModel Source #
General time reversible (GTR) substitution model for amino acids.