cabal-version: 1.12
name: cobot
version: 0.1.1.2
license: BSD3
license-file: LICENSE
copyright: 2018—2019, Less Wrong Bio
maintainer: pavel@yakovlev.me
author: Pavel Yakovlev, Bogdan Neterebskii, Alexander Sadovnikov
homepage: https://github.com/biocad/cobot#readme
bug-reports: https://github.com/biocad/cobot/issues
synopsis: Computational biology toolkit to collaborate with researchers in constructive protein engineering
description:
    Please see the README on GitHub at <https://github.com/biocad/cobot#readme>
category: Bio
build-type: Simple
extra-source-files:
    README.md
    ChangeLog.md

source-repository head
    type: git
    location: https://github.com/biocad/cobot

library
    exposed-modules:
        Bio.Chain
        Bio.Chain.Alignment
        Bio.Chain.Alignment.Algorithms
        Bio.Chain.Alignment.Scoring
        Bio.Chain.Alignment.Scoring.Loader
        Bio.Chain.Alignment.Scoring.TH
        Bio.Chain.Alignment.Type
        Bio.Molecule
        Bio.NucleicAcid.Chain
        Bio.NucleicAcid.Nucleotide
        Bio.NucleicAcid.Nucleotide.Instances
        Bio.NucleicAcid.Nucleotide.Type
        Bio.Protein.Algebra
        Bio.Protein.AminoAcid
        Bio.Protein.AminoAcid.Instances
        Bio.Protein.AminoAcid.Type
        Bio.Protein.Chain
        Bio.Protein.Chain.Builder
        Bio.Protein.Metric
        Bio.Utils.Geometry
        Bio.Utils.IUPAC
        Bio.Utils.Matrix
        Bio.Utils.Monomer
    hs-source-dirs: src
    other-modules:
        Paths_cobot
    default-language: Haskell2010
    default-extensions: AllowAmbiguousTypes ConstraintKinds
                        DeriveFoldable DeriveFunctor DeriveGeneric DeriveTraversable
                        FlexibleContexts FlexibleInstances GeneralizedNewtypeDeriving
                        MultiWayIf RankNTypes RecordWildCards ScopedTypeVariables
                        TypeApplications TypeFamilies TypeSynonymInstances
                        UndecidableInstances
    build-depends:
        array >=0.5.4.0 && <0.6,
        base >=4.7 && <5,
        bytestring >=0.10.10.0 && <0.11,
        containers >=0.6.2.1 && <0.7,
        deepseq >=1.4.4.0 && <1.5,
        lens >=4.18.1 && <4.19,
        linear >=1.20.9 && <1.21,
        megaparsec >=8.0.0 && <8.1,
        mtl >=2.2.2 && <2.3,
        split >=0.2.3.4 && <0.3,
        template-haskell >=2.15.0.0 && <2.16,
        text >=1.2.4.0 && <1.3

test-suite cobot-test
    type: exitcode-stdio-1.0
    main-is: Spec.hs
    hs-source-dirs: test
    other-modules:
        HandcraftedSpec
        JuliaSpec
        Paths_cobot
    default-language: Haskell2010
    default-extensions: AllowAmbiguousTypes ConstraintKinds
                        DeriveFoldable DeriveFunctor DeriveGeneric DeriveTraversable
                        FlexibleContexts FlexibleInstances GeneralizedNewtypeDeriving
                        MultiWayIf RankNTypes RecordWildCards ScopedTypeVariables
                        TypeApplications TypeFamilies TypeSynonymInstances
                        UndecidableInstances
    ghc-options: -threaded -rtsopts
                 "-with-rtsopts=-A64m -qb0 -I0 -N -qn4"
    build-depends:
        array >=0.5.4.0 && <0.6,
        base >=4.7 && <5,
        bytestring >=0.10.10.0 && <0.11,
        cobot -any,
        containers >=0.6.2.1 && <0.7,
        deepseq >=1.4.4.0 && <1.5,
        hspec >=2.7.1 && <2.8,
        lens >=4.18.1 && <4.19,
        linear >=1.20.9 && <1.21,
        megaparsec >=8.0.0 && <8.1,
        mtl >=2.2.2 && <2.3,
        split >=0.2.3.4 && <0.3,
        template-haskell >=2.15.0.0 && <2.16,
        text >=1.2.4.0 && <1.3

benchmark cobot-bench
    type: exitcode-stdio-1.0
    main-is: Main.hs
    hs-source-dirs: bench
    other-modules:
        Paths_cobot
    default-language: Haskell2010
    default-extensions: AllowAmbiguousTypes ConstraintKinds
                        DeriveFoldable DeriveFunctor DeriveGeneric DeriveTraversable
                        FlexibleContexts FlexibleInstances GeneralizedNewtypeDeriving
                        MultiWayIf RankNTypes RecordWildCards ScopedTypeVariables
                        TypeApplications TypeFamilies TypeSynonymInstances
                        UndecidableInstances OverloadedStrings
    ghc-options: -threaded -rtsopts
                 "-with-rtsopts=-A64m -qb0 -I0 -N -qn4"
    build-depends:
        array >=0.5.4.0 && <0.6,
        base >=4.7 && <5,
        bytestring >=0.10.10.0 && <0.11,
        clock ==0.8.*,
        cobot -any,
        containers >=0.6.2.1 && <0.7,
        criterion >=1.5.6.2 && <1.6,
        deepseq >=1.4.4.0 && <1.5,
        lens >=4.18.1 && <4.19,
        linear >=1.20.9 && <1.21,
        megaparsec >=8.0.0 && <8.1,
        mtl >=2.2.2 && <2.3,
        parallel >=3.2.2.0 && <3.3,
        random ==1.1.*,
        split >=0.2.3.4 && <0.3,
        template-haskell >=2.15.0.0 && <2.16,
        text >=1.2.4.0 && <1.3