Name: biohazard Version: 2.0 Synopsis: bioinformatics support library Description: This is a collection of modules I separated from various bioinformatics tools. Category: Bioinformatics Homepage: https://bitbucket.org/ustenzel/biohazard License: BSD3 License-File: LICENSE Extra-Source-Files: CHANGELOG.md Author: Udo Stenzel Maintainer: u.stenzel@web.de Copyright: (C) 2010-2017 Udo Stenzel Cabal-version: >= 1.10 Build-type: Simple Tested-with: GHC == 7.8.4, GHC == 7.10.3, GHC == 8.0.2, GHC == 8.2.2, GHC == 8.4.3, GHC == 8.6.1 source-repository head type: git location: https://bitbucket.org/ustenzel/biohazard.git Library Exposed-modules: Bio.Adna, Bio.Align, Bio.Bam, Bio.Bam.Evan, Bio.Bam.Fastq, Bio.Bam.Filter, Bio.Bam.Header, Bio.Bam.Index, Bio.Bam.Pileup, Bio.Bam.Reader Bio.Bam.Rec, Bio.Bam.Regions, Bio.Bam.Rmdup, Bio.Bam.Trim, Bio.Bam.Writer, Bio.Base, Bio.Prelude, Bio.Streaming, Bio.Streaming.Bgzf, Bio.Streaming.Bytes, Bio.Streaming.Furrow, Bio.Streaming.Parse, Bio.Streaming.Vector, Bio.TwoBit, Bio.Util.MMap, Bio.Util.Nub, Bio.Util.Numeric, Bio.Util.Storable, Bio.Util.Text Build-depends: attoparsec >= 0.10 && < 0.14, base >= 4.7 && < 4.13, base-prelude == 1.2.0.*, bytestring >= 0.10.2 && < 0.11, containers >= 0.5 && < 0.7, directory >= 1.2.1 && < 1.4, exceptions >= 0.6 && < 0.11, hashable >= 1.0 && < 1.3, primitive >= 0.5 && < 0.7, stm >= 2.4 && < 2.6, streaming >= 0.1.4.2 && < 0.3, text >= 1.0 && < 1.3, transformers >= 0.4.1 && < 0.6, unix >= 2.5 && < 2.8, unordered-containers >= 0.2.3 && < 0.3, vector >= 0.11 && < 0.13, vector-algorithms >= 0.3 && < 0.8, zlib == 0.6.* if !impl(ghc >= 7.10) build-depends: bifunctors == 5.* if !impl(ghc >= 8.0) build-depends: semigroups == 0.18.* Ghc-options: -Wall if impl(ghc >= 8.0) Ghc-options: -Wincomplete-uni-patterns -Wredundant-constraints -Wcompat -Wincomplete-record-updates -Widentities if impl(ghc >= 8.4) Ghc-options: -Wmissing-export-lists -Wpartial-fields Default-Language: Haskell2010 Default-Extensions: BangPatterns, DeriveDataTypeable, DeriveGeneric, FlexibleContexts, FlexibleInstances, GeneralizedNewtypeDeriving, LambdaCase, MultiParamTypeClasses, NoImplicitPrelude, OverloadedStrings, RecordWildCards, TypeSynonymInstances Other-Extensions: CPP, ExistentialQuantification, ForeignFunctionInterface, Rank2Types, TypeFamilies Hs-source-dirs: . Include-dirs: cbits Install-Includes: myers_align.h C-sources: cbits/loops.c, cbits/mmap.c, cbits/myers_align.c, cbits/trim.c cbits/zlib.c CC-options: -fPIC -- :vim:tw=132: