name: ViennaRNA-bindings version: 0.233.1.1 maintainer: choener@tbi.univie.ac.at homepage: https://github.com/choener/ViennaRNA-bindings bug-reports: https://github.com/choener/ViennaRNA-bindings/issues license: OtherLicense license-file: LICENSE author: Christian Hoener zu Siederdissen (bindings) 2013-2017, The ViennaRNA Team (library) 1994-2017 copyright: The ViennaRNA Team 1994-2017 category: Bioinformatics, Bindings, FFI build-type: Simple cabal-version: >=1.10 tested-with: GHC == 7.8.4, GHC == 7.10.3, GHC == 8.0.1, GHC == 8.0.2 synopsis: ViennaRNA v2 bindings description: Bindings to the ViennaRNA package, version 2.3.3. . Only a partial set of bindings is provided. If you need additional functions, please open an issue on github. . The ViennaRNA bindings package now directly provide all necessary functionality. Please note that this package uses the same license as the ViennaRNA package. . If you use this software, please cite: . @ R. Lorenz, S.H. Bernhart, C. Hoener zu Siederdissen, H. Tafer, C. Flamm, P.F. Stadler and I.L. Hofacker (2011) ViennaRNA Package 2.0 Algorithms for Molecular Biology: 6:26 @ . extra-source-files: C/ViennaRNA/*.h C/ViennaRNA/*.c C/ViennaRNA/*.inc changelog.md README.md library exposed-modules: -- public interfaces BioInf.ViennaRNA.Bindings -- the FFI BioInf.ViennaRNA.Bindings.FFI.Centroid BioInf.ViennaRNA.Bindings.FFI.CoFold BioInf.ViennaRNA.Bindings.FFI.Duplex BioInf.ViennaRNA.Bindings.FFI.Fold BioInf.ViennaRNA.Bindings.FFI.PartFunc BioInf.ViennaRNA.Bindings.FFI.Utils build-depends: base == 4.* , array build-tools: c2hs extra-libraries: default-language: Haskell2010 default-extensions: CPP , ForeignFunctionInterface , NondecreasingIndentation , ScopedTypeVariables c-sources: C/ffiwrap_part_func.c C/ffiwrap_fold.c C/ffiwrap_centroid.c -- remove all of these, then @stack build --test@ and include files that have the missing definitions C/ViennaRNA/aln_util.c C/ViennaRNA/alphabet.c C/ViennaRNA/boltzmann_sampling.c C/ViennaRNA/centroid.c C/ViennaRNA/cofold.c C/ViennaRNA/commands.c C/ViennaRNA/constraints.c C/ViennaRNA/constraints_hard.c C/ViennaRNA/constraints_SHAPE.c C/ViennaRNA/constraints_soft.c C/ViennaRNA/data_structures.c C/ViennaRNA/dp_matrices.c C/ViennaRNA/duplex.c C/ViennaRNA/energy_par.c C/ViennaRNA/equilibrium_probs.c C/ViennaRNA/eval.c C/ViennaRNA/exterior_loops.c C/ViennaRNA/file_formats.c C/ViennaRNA/file_formats_msa.c C/ViennaRNA/file_utils.c C/ViennaRNA/fold.c C/ViennaRNA/gquad.c C/ViennaRNA/hairpin_loops.c C/ViennaRNA/interior_loops.c C/ViennaRNA/list.c C/ViennaRNA/mfe.c C/ViennaRNA/mm.c C/ViennaRNA/model.c C/ViennaRNA/multibranch_loops.c C/ViennaRNA/params.c C/ViennaRNA/part_func.c C/ViennaRNA/part_func_co.c C/ViennaRNA/plex.c C/ViennaRNA/plex_functions.c C/ViennaRNA/ribo.c C/ViennaRNA/string_utils.c C/ViennaRNA/structure_utils.c C/ViennaRNA/subopt.c C/ViennaRNA/unstructured_domains.c C/ViennaRNA/utils.c cc-options: -fPIC -DHAVE_STRDUP include-dirs: C test-suite properties type: exitcode-stdio-1.0 main-is: properties.hs ghc-options: -O2 -rtsopts hs-source-dirs: tests default-language: Haskell2010 default-extensions: CPP , TemplateHaskell build-depends: base , array , QuickCheck , tasty >= 0.11 , tasty-hunit >= 0.9 , tasty-silver >= 3.1 , tasty-th >= 0.1 , ViennaRNA-bindings source-repository head type: git location: git://github.com/choener/ViennaRNA-bindings