name: RNAlien version: 1.6.0 synopsis: Unsupervized construction of RNA family models description: RNAlien is a tool for automatic construction of RNAfamily models from a single sequence. . It is available as a commandline tool, for testing or construction of few sequences the webservice can be used. . The source code of RNAlien, as well as the webserver is open source and available via GitHub (License GPL-3): . * . * . TaxonomyTools which can be used to visualise the organisms included in a RNAlien result can be found here (License GPL-3): . * . * . For instruction how to use RNAlien please see the . . Dependencies: . * . * . * . * . * . Installation via cabal-install: . > cabal install RNAlien license: GPL-3 license-file: LICENSE author: Florian Eggenhofer maintainer: egg@informatik.uni-freiburg.de copyright: Florian Eggenhofer category: Bioinformatics build-type: Simple cabal-version: >= 1.10.0 tested-with: GHC == 8.4.4 source-repository head type: git location: https://github.com/eggzilla/RNAlien source-repository this type: git location: https://github.com/eggzilla/RNAlien/tree/1.6.0 tag: 1.6.0 executable RNAlien Hs-Source-Dirs: ./Biobase/ main-is: RNAlien.hs ghc-options: -Wall default-language: Haskell2010 other-modules: Paths_RNAlien build-depends: base >=4.5 && <5, cmdargs, directory, random, containers, RNAlien, time, either-unwrap, filepath, BiobaseFasta == 0.3.0.* executable RNAlienStatistics Hs-Source-Dirs: ./Biobase/ main-is: RNAlienStatistics.hs ghc-options: -Wall default-language: Haskell2010 other-modules: Paths_RNAlien build-depends: base >=4.5 && <5, cmdargs, cassava, vector, process, bytestring, either-unwrap, RNAlien, directory, split, filepath, ViennaRNAParser>=1.3.2, BiobaseFasta == 0.3.0.*, BiobaseTypes == 0.2.0.* executable cmsearchToBed Hs-Source-Dirs: ./Biobase/ main-is: cmsearchToBED.hs ghc-options: -Wall default-language: Haskell2010 other-modules: Paths_RNAlien build-depends: base >=4.5 && <5, cmdargs, either-unwrap, RNAlien, bytestring, text executable RNAcentralHTTPRequest Hs-Source-Dirs: ./Biobase/ main-is: RNAcentralHTTPRequest.hs ghc-options: -Wall default-language: Haskell2010 other-modules: Paths_RNAlien build-depends: base >=4.5 && <5, cmdargs, either-unwrap, RNAlien Library Hs-Source-Dirs: . ghc-options: -Wall -fno-warn-unused-do-bind default-language: Haskell2010 build-depends: base >=4.5 && <5, cmdargs, ViennaRNAParser>=1.3.2, process, directory, parsec, random, bytestring, Taxonomy >= 1.0.3, either-unwrap, containers, ClustalParser>=1.2.1, vector, edit-distance, cassava, matrix, hierarchical-clustering, filepath, HTTP, http-conduit, hxt, network<=2.8.0.0, aeson, text, transformers, pureMD5, http-types, text-metrics, BiobaseTypes == 0.2.0.*, BiobaseFasta == 0.3.0.* , BiobaseBlast == 0.3.0.*, BlastHTTP >= 1.4.0, BiobaseHTTP == 1.1.0 Exposed-Modules: Biobase.RNAlien.Types Biobase.RNAlien.Library Biobase.RNAlien.RNAcentralHTTP Biobase.RNAlien.InfernalParser