name: RNAlien version: 1.3.1 synopsis: Unsupervized construction of RNA family models description: RNAlien is a tool for automatic construction of RNAfamily models from a single sequence. . It is available as a commandline tool, for testing or construction of few sequences the webservice can be used. . The source code of RNAlien, as well as the webserver is open source and available via GitHub (License GPL-3): . * . * . TaxonomyTools which can be used to visualise the organisms included in a RNAlien result can be found here (License GPL-3): . * . * . For instruction how to use RNAlien please see the . . Dependencies: . * . * . * . * . * . Installation via cabal-install: . > cabal install RNAlien license: GPL-3 license-file: LICENSE author: Florian Eggenhofer maintainer: egg@tbi.univie.ac.at -- copyright: category: Bioinformatics build-type: Simple cabal-version: >=1.8 source-repository head type: git location: https://github.com/eggzilla/RNAlien source-repository this type: git location: https://github.com/eggzilla/RNAlien/tree/1.3.1 tag: 1.3.1 executable RNAlien Hs-Source-Dirs: ./src/Bio/ main-is: RNAlien.hs ghc-options: -Wall -O2 build-depends: base >=4.5 && <5, cmdargs, directory, biofasta, random, biocore, containers, RNAlien, time, either-unwrap, filepath executable RNAlienStatistics Hs-Source-Dirs: ./src/Bio/ main-is: RNAlienStatistics.hs ghc-options: -Wall -O2 build-depends: base >=4.5 && <5, cmdargs, cassava, vector, process, bytestring, either-unwrap, RNAlien, directory, biofasta, biocore, split, filepath, ViennaRNAParser>=1.3.2 executable SelectSequences Hs-Source-Dirs: ./src/Bio/ main-is: SelectSequences.hs ghc-options: -Wall -O2 build-depends: base >=4.5 && <5, cmdargs, either-unwrap, RNAlien executable cmsearchToBed Hs-Source-Dirs: ./src/Bio/ main-is: cmsearchToBED.hs ghc-options: -Wall -O2 build-depends: base >=4.5 && <5, cmdargs, either-unwrap, RNAlien, bytestring, text executable RNAcentralHTTPRequest Hs-Source-Dirs: ./src/Bio/ main-is: RNAcentralHTTPRequest.hs ghc-options: -Wall -O2 build-depends: base >=4.5 && <5, cmdargs, either-unwrap, RNAlien Library Hs-Source-Dirs: ./src/ ghc-options: -Wall -O2 -fno-warn-unused-do-bind build-depends: base >=4.5 && <5, cmdargs, ViennaRNAParser>=1.3.2, process, directory, blastxml>=0.3.2, biofasta, parsec, random, BlastHTTP>=1.2.1, biocore, bytestring, Taxonomy >= 1.0.2, either-unwrap, containers, ClustalParser>=1.2.1, EntrezHTTP>=1.0.3, vector, edit-distance, cassava, matrix, hierarchical-clustering, filepath, HTTP, http-conduit, hxt, network, aeson, text, transformers, pureMD5, http-types, text-metrics Exposed-Modules: Bio.RNAlienData Bio.RNAlienLibrary Bio.RNAcentralHTTP Bio.InfernalParser