-*-change-log-*- ### 1.3.0 [Florian Eggenhofer](mailto:egg@cs.uni-freiburg.de) 14. November 2019 * Fixed requested tick number for compilation with GHC 8.6.* * Changed to Biobase style ### 1.2.3 [Florian Eggenhofer](mailto:egg@cs.uni-freiburg.de) 12. March 2018 * Fixed parsing of additional newline in Biopythons AlignIO output without conservation track ### 1.2.2 [Florian Eggenhofer](mailto:egg@cs.uni-freiburg.de) 07. March 2018 * Clustal parser can now parse alignments with missing consensus annotation ### 1.2.1 [Florian Eggenhofer](mailto:egg@cs.uni-freiburg.de) 06. February 2017 * Structural alignment parser now works with multiline consensus structures ### 1.2.0 [Florian Eggenhofer](mailto:egg@cs.uni-freiburg.de) 07. January 2017 * Changed datastructures for sequence identifers and sequences to Data.Text ### 1.1.4 [Florian Eggenhofer](mailto:egg@cs.uni-freiburg.de) 30. May 2016 * Fixed a bug in output of clustal alignments with sequence length of 60 ### 1.1.3 [Florian Eggenhofer](mailto:florian.eggenhofer@univie.ac.at) 4. July 2015 * Nucleotide sequences are now parsed by a unified function in line with IUPAC nucleotide code ### 1.1.2 [Florian Eggenhofer](mailto:florian.eggenhofer@univie.ac.at) 3. July 2015 * Included parsing of optional field in mlocarna clustal output ### 1.1.1 [Florian Eggenhofer](mailto:florian.eggenhofer@univie.ac.at) 2. July 2015 * Added support for cmalign clustal output . ### 1.1.0 [Florian Eggenhofer](mailto:florian.eggenhofer@univie.ac.at) 1. July 2015 * Added Hspec test-suite for parsing functions * Added Show instances for ClustalAlignment and StructuralClustalAlignment ### 1.0.3 [Florian Eggenhofer](mailto:florian.eggenhofer@univie.ac.at) 19. April 2015 * Added Y (pyrimidine) and R (purine) to sequence characters ### 1.0.2 [Florian Eggenhofer](mailto:florian.eggenhofer@univie.ac.at> 19. March 2015 * Linebreaks are now filtered from structural alignment sequence identifiers ### 1.0.1 [Florian Eggenhofer](mailto:florian.eggenhofer@univie.ac.at> 27. October 2014 * Fixed compiler warnings and updated documentation to mention structural clustal format * Added -Wall and -O2 compiler options * Added support for clustal alignments with secondary structure annotation