Safe Haskell	None
Language	Haskell2010

Biobase.Primary.Nuc.RNA

Contents

Orphan instances

Synopsis

pattern A :: forall k (n :: k). Letter RNA n
pattern C :: forall k (n :: k). Letter RNA n
pattern G :: forall k (n :: k). Letter RNA n
pattern U :: forall k (n :: k). Letter RNA n
pattern N :: forall k (n :: k). Letter RNA n
acgu :: [Letter RNA n]
charRNA :: Char -> Letter RNA n
rnaChar :: Letter RNA n -> Char
crna :: Iso' Char (Letter RNA n)
rnaSeq :: MkPrimary p RNA n => p -> Primary RNA n

Documentation

pattern A :: forall k (n :: k). Letter RNA n Source #

pattern C :: forall k (n :: k). Letter RNA n Source #

pattern G :: forall k (n :: k). Letter RNA n Source #

pattern U :: forall k (n :: k). Letter RNA n Source #

pattern N :: forall k (n :: k). Letter RNA n Source #

acgu :: [Letter RNA n] Source #

charRNA :: Char -> Letter RNA n Source #

rnaChar :: Letter RNA n -> Char Source #

crna :: Iso' Char (Letter RNA n) Source #

An isomorphism from Char to 'Letter RNA'. This assumes that the underlying Chars actually represent an RNA sequence. This allows typesafe modification of RNA sequences since only [A,C,G,U,N] are allowed.

rnaSeq :: MkPrimary p RNA n => p -> Primary RNA n Source #

Orphan instances

LetterChar RNA (n :: k) Source #
Instance details Methods letterChar :: Letter RNA n -> Char Source # charLetter :: Char -> Letter RNA n Source #
MkPrimary (Vector Char) RNA (n :: k) Source #
Instance details Methods primary :: Vector Char -> Primary RNA n Source #
IsString [Letter RNA n] Source #
Instance details Methods fromString :: String -> [Letter RNA n] #
Bounded (Letter RNA n) Source #
Instance details Methods minBound :: Letter RNA n # maxBound :: Letter RNA n #
Enum (Letter RNA n) Source #
Instance details Methods succ :: Letter RNA n -> Letter RNA n # pred :: Letter RNA n -> Letter RNA n # toEnum :: Int -> Letter RNA n # fromEnum :: Letter RNA n -> Int # enumFrom :: Letter RNA n -> [Letter RNA n] # enumFromThen :: Letter RNA n -> Letter RNA n -> [Letter RNA n] # enumFromTo :: Letter RNA n -> Letter RNA n -> [Letter RNA n] # enumFromThenTo :: Letter RNA n -> Letter RNA n -> Letter RNA n -> [Letter RNA n] #
Read (Letter RNA n) Source #
Instance details Methods readsPrec :: Int -> ReadS (Letter RNA n) # readList :: ReadS [Letter RNA n] # readPrec :: ReadPrec (Letter RNA n) # readListPrec :: ReadPrec [Letter RNA n] #
Show (Letter RNA n) Source #
Instance details Methods showsPrec :: Int -> Letter RNA n -> ShowS # show :: Letter RNA n -> String # showList :: [Letter RNA n] -> ShowS #
ToJSON (Letter RNA n) Source #
Instance details Methods toJSON :: Letter RNA n -> Value # toEncoding :: Letter RNA n -> Encoding # toJSONList :: [Letter RNA n] -> Value # toEncodingList :: [Letter RNA n] -> Encoding #
FromJSON (Letter RNA n) Source #
Instance details Methods parseJSON :: Value -> Parser (Letter RNA n) # parseJSONList :: Value -> Parser [Letter RNA n] #