Safe Haskell	None
Language	Haskell2010

Biobase.Primary.Nuc.DNA

Contents

Orphan instances

Synopsis

pattern A :: forall k (n :: k). Letter DNA n
pattern C :: forall k (n :: k). Letter DNA n
pattern G :: forall k (n :: k). Letter DNA n
pattern T :: forall k (n :: k). Letter DNA n
pattern N :: forall k (n :: k). Letter DNA n
acgt :: [Letter DNA n]
charDNA :: Char -> Letter DNA n
dnaChar :: Letter DNA n -> Char
cdna :: Iso' Char (Letter DNA n)
dnaSeq :: MkPrimary p DNA n => p -> Primary DNA n

Documentation

pattern A :: forall k (n :: k). Letter DNA n Source #

pattern C :: forall k (n :: k). Letter DNA n Source #

pattern G :: forall k (n :: k). Letter DNA n Source #

pattern T :: forall k (n :: k). Letter DNA n Source #

pattern N :: forall k (n :: k). Letter DNA n Source #

acgt :: [Letter DNA n] Source #

charDNA :: Char -> Letter DNA n Source #

dnaChar :: Letter DNA n -> Char Source #

cdna :: Iso' Char (Letter DNA n) Source #

An isomorphism from Char to 'Letter DNA'. This assumes that the underlying Chars actually represent a DNA sequence. This allows typesafe modification of DNA sequences since only [A,C,G,T,N] are allowed.

dnaSeq :: MkPrimary p DNA n => p -> Primary DNA n Source #

Orphan instances

LetterChar DNA (n :: k) Source #
Instance details Methods letterChar :: Letter DNA n -> Char Source # charLetter :: Char -> Letter DNA n Source #
MkPrimary (Vector Char) DNA (n :: k) Source #
Instance details Methods primary :: Vector Char -> Primary DNA n Source #
IsString [Letter DNA n] Source #
Instance details Methods fromString :: String -> [Letter DNA n] #
Bounded (Letter DNA n) Source #
Instance details Methods minBound :: Letter DNA n # maxBound :: Letter DNA n #
Enum (Letter DNA n) Source #
Instance details Methods succ :: Letter DNA n -> Letter DNA n # pred :: Letter DNA n -> Letter DNA n # toEnum :: Int -> Letter DNA n # fromEnum :: Letter DNA n -> Int # enumFrom :: Letter DNA n -> [Letter DNA n] # enumFromThen :: Letter DNA n -> Letter DNA n -> [Letter DNA n] # enumFromTo :: Letter DNA n -> Letter DNA n -> [Letter DNA n] # enumFromThenTo :: Letter DNA n -> Letter DNA n -> Letter DNA n -> [Letter DNA n] #
Read (Letter DNA n) Source #
Instance details Methods readsPrec :: Int -> ReadS (Letter DNA n) # readList :: ReadS [Letter DNA n] # readPrec :: ReadPrec (Letter DNA n) # readListPrec :: ReadPrec [Letter DNA n] #
Show (Letter DNA n) Source #
Instance details Methods showsPrec :: Int -> Letter DNA n -> ShowS # show :: Letter DNA n -> String # showList :: [Letter DNA n] -> ShowS #