| +. | Biobase.Types.Index |
| -. | Biobase.Types.Index |
| AA | Biobase.Types.BioSequence |
| Accession | |
| 1 (Type/Class) | Biobase.Types.Accession |
| 2 (Data Constructor) | Biobase.Types.Accession |
| accession | |
| 1 (Function) | Biobase.Types.Accession |
| 2 (Function) | Biobase.Types.Taxonomy |
| accession' | Biobase.Types.Accession |
| attachPrefixes | Biobase.Types.Location |
| attachSuffixes | Biobase.Types.Location |
| BioSequence | |
| 1 (Type/Class) | Biobase.Types.BioSequence |
| 2 (Data Constructor) | Biobase.Types.BioSequence |
| bioSequence | Biobase.Types.BioSequence |
| Bitscore | |
| 1 (Type/Class) | Biobase.Types.Bitscore |
| 2 (Data Constructor) | Biobase.Types.Bitscore |
| blastRange1 | Biobase.Types.Location |
| BtCodon | DP.Backtraced.Codon |
| checkIndex | Biobase.Types.Index |
| Clan | |
| 1 (Type/Class) | Biobase.Types.Accession |
| 2 (Data Constructor) | Biobase.Types.Accession |
| Class | Biobase.Types.Taxonomy |
| Classification | Biobase.Types.Taxonomy |
| classification | Biobase.Types.Taxonomy |
| Codon | |
| 1 (Type/Class) | Biobase.Types.Codon |
| 2 (Data Constructor) | Biobase.Types.Codon |
| compactifySPForest | Biobase.Types.Structure |
| Complement | Biobase.Types.BioSequence |
| complement | Biobase.Types.BioSequence |
| DDG | |
| 1 (Type/Class) | Biobase.Types.Energy |
| 2 (Data Constructor) | Biobase.Types.Energy |
| dDG | Biobase.Types.Energy |
| ddg2Int | Biobase.Types.Energy |
| Delete | DP.Backtraced.Codon |
| delta | Biobase.Types.Index |
| DG | |
| 1 (Type/Class) | Biobase.Types.Energy |
| 2 (Data Constructor) | Biobase.Types.Energy |
| dG | Biobase.Types.Energy |
| DNA | Biobase.Types.BioSequence |
| dna2rna | Biobase.Types.BioSequence |
| dnaComplement | Biobase.Types.BioSequence |
| Evalue | |
| 1 (Type/Class) | Biobase.Types.Evalue |
| 2 (Data Constructor) | Biobase.Types.Evalue |
| Family | Biobase.Types.Taxonomy |
| Frameshift | DP.Backtraced.Codon |
| fromIndex | Biobase.Types.ReadingFrame |
| fromInt0 | Biobase.Types.Index |
| fromInt1 | Biobase.Types.Index |
| FwdPosition | |
| 1 (Type/Class) | Biobase.Types.Position |
| 2 (Data Constructor) | Biobase.Types.Position |
| fwdStart | Biobase.Types.Position |
| fwdStrand | Biobase.Types.Position |
| generateShape | Biobase.Types.Shape |
| Genus | Biobase.Types.Taxonomy |
| getBitscore | Biobase.Types.Bitscore |
| getEvalue | Biobase.Types.Evalue |
| getIndex | Biobase.Types.Index.Type, Biobase.Types.Index |
| getReadingFrame | Biobase.Types.ReadingFrame |
| getSpeciesNameRep | Biobase.Types.Names |
| getStrand | Biobase.Types.Strand |
| getTaxonomicRank | Biobase.Types.Names |
| guessAccessionType | Biobase.Types.Accession |
| I0 | Biobase.Types.Index |
| I1 | Biobase.Types.Index |
| Index | |
| 1 (Type/Class) | Biobase.Types.Index.Type, Biobase.Types.Index |
| 2 (Data Constructor) | Biobase.Types.Index.Type |
| index | Biobase.Types.Index.Type, Biobase.Types.Index |
| Insert | DP.Backtraced.Codon |
| Kingdom | Biobase.Types.Taxonomy |
| LimitType | Biobase.Types.Index.Type, Biobase.Types.Strand |
| locAppendLeft | Biobase.Types.Location |
| locAppendRight | Biobase.Types.Location |
| locAsLength | Biobase.Types.Location |
| Location | |
| 1 (Type/Class) | Biobase.Types.Location |
| 2 (Data Constructor) | Biobase.Types.Location |
| locDrop | Biobase.Types.Location |
| locDropEnd | Biobase.Types.Location |
| locIdentifier | Biobase.Types.Location |
| locLength | Biobase.Types.Location |
| locPosition | Biobase.Types.Location |
| locSequence | Biobase.Types.Location |
| locSplitAt | Biobase.Types.Location |
| locSplitEndAt | Biobase.Types.Location |
| locTake | Biobase.Types.Location |
| locTakeEnd | Biobase.Types.Location |
| LtIndex | Biobase.Types.Index.Type |
| LtStrand | Biobase.Types.Strand |
| Match | DP.Backtraced.Codon |
| maybeIndex | Biobase.Types.Index.Type, Biobase.Types.Index |
| MinusStrand | Biobase.Types.Strand |
| mkAAseq | Biobase.Types.BioSequence |
| mkDNAseq | Biobase.Types.BioSequence |
| mkRNAds | Biobase.Types.Structure |
| mkRNAseq | Biobase.Types.BioSequence |
| mkXNAseq | Biobase.Types.BioSequence |
| ModifyLocation | Biobase.Types.Location |
| MVector | Biobase.Types.Bitscore, Biobase.Types.Energy, Biobase.Types.Evalue, Biobase.Types.Index.Type, Biobase.Types.Names, Biobase.Types.Strand, Biobase.Types.Taxonomy |
| MV_Bitscore | Biobase.Types.Bitscore |
| MV_Classification | Biobase.Types.Taxonomy |
| MV_DDG | Biobase.Types.Energy |
| MV_DG | Biobase.Types.Energy |
| MV_Evalue | Biobase.Types.Evalue |
| MV_Index | Biobase.Types.Index.Type |
| MV_SpeciesName | Biobase.Types.Names |
| MV_Strand | Biobase.Types.Strand |
| NotStranded | Biobase.Types.Strand |
| Nucleotide | |
| 1 (Type/Class) | Biobase.Types.Accession |
| 2 (Data Constructor) | Biobase.Types.Accession |
| Order | Biobase.Types.Taxonomy |
| pairDist | Biobase.Types.Structure |
| Pfam | |
| 1 (Type/Class) | Biobase.Types.Accession |
| 2 (Data Constructor) | Biobase.Types.Accession |
| Phylum | Biobase.Types.Taxonomy |
| PIS | |
| 1 (Type/Class) | Biobase.Types.Location |
| 2 (Data Constructor) | Biobase.Types.Location |
| pis | Biobase.Types.Location |
| pisInfix | Biobase.Types.Location |
| pisPrefix | Biobase.Types.Location |
| pisSequence | Biobase.Types.Location |
| pisSuffix | Biobase.Types.Location |
| PlusStrand | Biobase.Types.Strand |
| prob2Score | Biobase.Types.Bitscore |
| Protein | |
| 1 (Type/Class) | Biobase.Types.Accession |
| 2 (Data Constructor) | Biobase.Types.Accession |
| ReadingFrame | |
| 1 (Type/Class) | Biobase.Types.ReadingFrame |
| 2 (Data Constructor) | Biobase.Types.ReadingFrame |
| Region | DP.Backtraced.Codon |
| reIndex | Biobase.Types.Index |
| retagAccession | Biobase.Types.Accession |
| retagLocation | Biobase.Types.Location |
| retagPis | Biobase.Types.Location |
| reverseComplement | Biobase.Types.BioSequence |
| rf | Biobase.Types.ReadingFrame |
| Rfam | |
| 1 (Type/Class) | Biobase.Types.Accession |
| 2 (Data Constructor) | Biobase.Types.Accession |
| RNA | Biobase.Types.BioSequence |
| rna2dna | Biobase.Types.BioSequence |
| rnaComplement | Biobase.Types.BioSequence |
| RNAds | |
| 1 (Type/Class) | Biobase.Types.Structure |
| 2 (Data Constructor) | Biobase.Types.Structure |
| rnads | Biobase.Types.Structure |
| rnads2rnassPair | Biobase.Types.Structure |
| rnadsL | Biobase.Types.Structure |
| rnadsR | Biobase.Types.Structure |
| RNAensembleStructure | Biobase.Types.Structure |
| RNAes | Biobase.Types.Structure |
| rnaes | Biobase.Types.Structure |
| RNApset | |
| 1 (Type/Class) | Biobase.Types.Structure |
| 2 (Data Constructor) | Biobase.Types.Structure |
| rnapset | Biobase.Types.Structure |
| rnapsetRNAss | Biobase.Types.Structure |
| rnapsetSLen | Biobase.Types.Structure |
| RNAshape | |
| 1 (Type/Class) | Biobase.Types.Shape |
| 2 (Data Constructor) | Biobase.Types.Shape |
| rnashape | Biobase.Types.Shape |
| rnashapelevel | Biobase.Types.Shape |
| rnashapePairSet | Biobase.Types.Shape |
| RNAshapepset | |
| 1 (Type/Class) | Biobase.Types.Shape |
| 2 (Data Constructor) | Biobase.Types.Shape |
| rnashapepset | Biobase.Types.Shape |
| rnashapepsetlevel | Biobase.Types.Shape |
| RNAss | |
| 1 (Type/Class) | Biobase.Types.Structure |
| 2 (Data Constructor) | Biobase.Types.Structure |
| rnass | Biobase.Types.Structure |
| rnass2shape | Biobase.Types.Shape |
| rnassPairSet | Biobase.Types.Structure |
| rnassPairSet' | |
| 1 (Function) | Biobase.Types.Structure |
| 2 (Function) | Biobase.Types.Shape |
| rnassSPForest | Biobase.Types.Structure |
| RNAStructureError | |
| 1 (Type/Class) | Biobase.Types.Structure |
| 2 (Data Constructor) | Biobase.Types.Structure |
| score2Prob | Biobase.Types.Bitscore |
| SequenceIdentifier | |
| 1 (Type/Class) | Biobase.Types.BioSequence |
| 2 (Data Constructor) | Biobase.Types.BioSequence |
| shapeForest | Biobase.Types.Shape |
| shapeForestshape | Biobase.Types.Shape |
| ShapeLevel | Biobase.Types.Shape |
| shapePairDist | Biobase.Types.Shape |
| Shifted | DP.Backtraced.Codon |
| shrinkBioSequence | Biobase.Types.BioSequence |
| SL1 | Biobase.Types.Shape |
| SL2 | Biobase.Types.Shape |
| SL3 | Biobase.Types.Shape |
| SL4 | Biobase.Types.Shape |
| SL5 | Biobase.Types.Shape |
| Species | |
| 1 (Type/Class) | Biobase.Types.Accession |
| 2 (Data Constructor) | Biobase.Types.Accession |
| 3 (Data Constructor) | Biobase.Types.Taxonomy |
| species | Biobase.Types.Taxonomy |
| SpeciesName | |
| 1 (Type/Class) | Biobase.Types.Names |
| 2 (Data Constructor) | Biobase.Types.Names |
| speciesName | Biobase.Types.Names |
| speciesNameBimap | Biobase.Types.Names.Internal |
| speciesNameBimapAdd | Biobase.Types.Names.Internal |
| speciesNameBimapLookupInt | Biobase.Types.Names.Internal |
| Strand | |
| 1 (Type/Class) | Biobase.Types.Strand |
| 2 (Data Constructor) | Biobase.Types.Strand |
| strandRF | Biobase.Types.ReadingFrame |
| subLocation | Biobase.Types.Location |
| SubOrder | Biobase.Types.Taxonomy |
| subPisLocation | Biobase.Types.Location |
| Taxon | |
| 1 (Type/Class) | Biobase.Types.Taxonomy |
| 2 (Data Constructor) | Biobase.Types.Taxonomy |
| TaxonomicRank | |
| 1 (Type/Class) | Biobase.Types.Names |
| 2 (Data Constructor) | Biobase.Types.Names |
| test | Biobase.Types.Shape |
| toInt | Biobase.Types.Index |
| toInt0 | Biobase.Types.Index |
| toInt1 | Biobase.Types.Index |
| Transcribe | Biobase.Types.BioSequence |
| transcribe | Biobase.Types.BioSequence |
| TranscribeTo | Biobase.Types.BioSequence |
| Unknown | Biobase.Types.Taxonomy |
| UnknownStrand | Biobase.Types.Strand |
| unsafePlus | Biobase.Types.Index |
| Vector | Biobase.Types.Bitscore, Biobase.Types.Energy, Biobase.Types.Evalue, Biobase.Types.Index.Type, Biobase.Types.Names, Biobase.Types.Strand, Biobase.Types.Taxonomy |
| verifyRNAss | Biobase.Types.Structure |
| V_Bitscore | Biobase.Types.Bitscore |
| V_Classification | Biobase.Types.Taxonomy |
| V_DDG | Biobase.Types.Energy |
| V_DG | Biobase.Types.Energy |
| V_Evalue | Biobase.Types.Evalue |
| V_Index | Biobase.Types.Index.Type |
| V_SpeciesName | Biobase.Types.Names |
| V_Strand | Biobase.Types.Strand |
| XNA | Biobase.Types.BioSequence |
| _aa | DP.Backtraced.Codon |
| _annotation | DP.Backtraced.Codon |
| _BioSequence | Biobase.Types.BioSequence |
| _bioSequence | Biobase.Types.BioSequence |
| _codon | DP.Backtraced.Codon |
| _frameshift | DP.Backtraced.Codon |
| _FwdPosition | Biobase.Types.Position |
| _fwdStart | Biobase.Types.Position |
| _fwdStrand | Biobase.Types.Position |
| _getAccession | Biobase.Types.Accession |
| _locIdentifier | Biobase.Types.Location |
| _locPosition | Biobase.Types.Location |
| _locSequence | Biobase.Types.Location |
| _pisInfix | Biobase.Types.Location |
| _pisPrefix | Biobase.Types.Location |
| _pisSuffix | Biobase.Types.Location |
| _region | DP.Backtraced.Codon |
| _rnadsL | Biobase.Types.Structure |
| _rnadsR | Biobase.Types.Structure |
| _rnaes | Biobase.Types.Structure |
| _rnaOffender | Biobase.Types.Structure |
| _rnapset | Biobase.Types.Structure |
| _rnapsetSLen | Biobase.Types.Structure |
| _rnashape | Biobase.Types.Shape |
| _rnashapelevel | Biobase.Types.Shape |
| _rnashapepset | Biobase.Types.Shape |
| _rnashapepsetlevel | Biobase.Types.Shape |
| _rnass | Biobase.Types.Structure |
| _rnaStructureError | Biobase.Types.Structure |
| _SequenceIdentifier | Biobase.Types.BioSequence |
| _sequenceIdentifier | Biobase.Types.BioSequence |