# # This matrix was created by Todd Lowe 12/10/92 # # Uses ambiguous nucleotide codes, probabilities rounded to # nearest integer # # Lowest score = -4, Highest score = 5 # A T G C A 5 -4 -4 -4 T -4 5 -4 -4 G -4 -4 5 -4 C -4 -4 -4 5 S -4 -4 1 1 W 1 1 -4 -4 R 1 -4 1 -4 Y -4 1 -4 1 K -4 1 1 -4 M 1 -4 -4 1 B -4 -1 -1 -1 V -1 -4 -1 -1 H -1 -1 -4 -1 D -1 -1 -1 -4 N -2 -2 -2 -2