Index
| $sel:_accession:HitDescription | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_alignmentLength:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_align_len:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_bitScore:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_bit_score:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_blastcmdoutput2:BlastCmdJSON2 | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_blastDatabase:BlastTabularResult | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_blastHitNumber:BlastTabularResult | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_blastoutput2:BlastJSON2 | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_blastProgram:BlastTabularResult | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_blastQueryId:BlastTabularResult | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_db:SearchTarget | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_db_len:SearchStat | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_db_num:SearchStat | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_description:Hit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_eff_space:SearchStat | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_entropy:SearchStat | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_eValue:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_evalue:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_expect:Params | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_filter:Params | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_gapOpenScore:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_gaps:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_gap_extend:Params | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_gap_open:Params | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_hitLines:BlastTabularResult | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_hits:Search | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_hitSeqEnd:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_hitSeqStart:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_hit_from:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_hit_strand:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_hit_to:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_hseq:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_hsps:Hit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_hsp_len:SearchStat | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_hsp_num:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_id:HitDescription | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_identity:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_kappa:SearchStat | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_lambda:SearchStat | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_len:Hit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_midline:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_misMatches:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_num:Hit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_params:BlastReport | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_program:BlastReport | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_qseq:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_queryEnd:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_queryId:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_querySeq:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_queryStart:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_query_from:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_query_id:Search | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_query_len:Search | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_query_strand:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_query_title:Search | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_query_to:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_reference:BlastReport | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_report:BlastOutput2 | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_results:BlastReport | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_score:Hsp | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_sc_match:Params | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_sc_mismatch:Params | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_search:BlastJSONResult | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_search_target:BlastReport | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_seqIdentity:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_stat:Search | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_subjectFrame:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_subjectId:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_subjectSeq:BlastTabularHit | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_taxid:HitDescription | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_title:HitDescription | Biobase.BLAST.Types, Biobase.BLAST |
| $sel:_version:BlastReport | Biobase.BLAST.Types, Biobase.BLAST |
| AASubstMat | |
| 1 (Type/Class) | Biobase.SubstMatrix.Types |
| 2 (Data Constructor) | Biobase.SubstMatrix.Types |
| aaSubstMat | Biobase.SubstMatrix.Types |
| accession | Biobase.BLAST.Types, Biobase.BLAST |
| alignmentLength | Biobase.BLAST.Types, Biobase.BLAST |
| align_len | Biobase.BLAST.Types, Biobase.BLAST |
| ANuc1SubstMat | |
| 1 (Type/Class) | Biobase.SubstMatrix.Types |
| 2 (Data Constructor) | Biobase.SubstMatrix.Types |
| anuc1SubstMat | Biobase.SubstMatrix.Types |
| ANuc2SubstMat | |
| 1 (Type/Class) | Biobase.SubstMatrix.Types |
| 2 (Data Constructor) | Biobase.SubstMatrix.Types |
| anuc2SubstMat | Biobase.SubstMatrix.Types |
| ANuc3SubstMat | |
| 1 (Type/Class) | Biobase.SubstMatrix.Types |
| 2 (Data Constructor) | Biobase.SubstMatrix.Types |
| anuc3SubstMat | Biobase.SubstMatrix.Types |
| bitScore | Biobase.BLAST.Types, Biobase.BLAST |
| bit_score | Biobase.BLAST.Types, Biobase.BLAST |
| BlastCmdJSON2 | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| blastCmdJSON2FromFile | Biobase.BLAST.Import |
| blastcmdoutput2 | Biobase.BLAST.Types, Biobase.BLAST |
| blastDatabase | Biobase.BLAST.Types, Biobase.BLAST |
| blastFromFile | Biobase.BLAST.Import, Biobase.BLAST |
| blastHitNumber | Biobase.BLAST.Types, Biobase.BLAST |
| blastHTTPFromFile | Biobase.BLAST.Import |
| BlastJSON2 | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| BlastJSONResult | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| BlastN | Biobase.BLAST.Types, Biobase.BLAST |
| BlastOutput2 | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| blastoutput2 | Biobase.BLAST.Types, Biobase.BLAST |
| BlastP | Biobase.BLAST.Types, Biobase.BLAST |
| BlastProgram | Biobase.BLAST.Types, Biobase.BLAST |
| blastProgram | Biobase.BLAST.Types, Biobase.BLAST |
| blastQueryId | Biobase.BLAST.Types, Biobase.BLAST |
| BlastReport | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| BlastTabularHit | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| BlastTabularResult | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| BlastX | Biobase.BLAST.Types, Biobase.BLAST |
| db | Biobase.BLAST.Types, Biobase.BLAST |
| db_len | Biobase.BLAST.Types, Biobase.BLAST |
| db_num | Biobase.BLAST.Types, Biobase.BLAST |
| description | Biobase.BLAST.Types, Biobase.BLAST |
| Distance | Biobase.SubstMatrix.Types |
| eff_space | Biobase.BLAST.Types, Biobase.BLAST |
| embeddedPamBlosum | Biobase.SubstMatrix.Embedded |
| embeddedPamBlosumFiles | Biobase.SubstMatrix.Embedded |
| entropy | Biobase.BLAST.Types, Biobase.BLAST |
| eValue | Biobase.BLAST.Types, Biobase.BLAST |
| evalue | Biobase.BLAST.Types, Biobase.BLAST |
| expect | Biobase.BLAST.Types, Biobase.BLAST |
| filter | Biobase.BLAST.Types, Biobase.BLAST |
| fromByteString | Biobase.SubstMatrix.Import |
| fromFile | Biobase.SubstMatrix.Import |
| fromFileOrCached | Biobase.SubstMatrix |
| GapCost | |
| 1 (Type/Class) | Biobase.SubstMatrix.Types |
| 2 (Data Constructor) | Biobase.SubstMatrix.Types |
| gapOpenScore | Biobase.BLAST.Types, Biobase.BLAST |
| gaps | Biobase.BLAST.Types, Biobase.BLAST |
| gap_extend | Biobase.BLAST.Types, Biobase.BLAST |
| gap_open | Biobase.BLAST.Types, Biobase.BLAST |
| gcCont | Biobase.SubstMatrix.Types |
| gcInit | Biobase.SubstMatrix.Types |
| Hit | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| HitDescription | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| hitLines | Biobase.BLAST.Types, Biobase.BLAST |
| hits | Biobase.BLAST.Types, Biobase.BLAST |
| hitSeqEnd | Biobase.BLAST.Types, Biobase.BLAST |
| hitSeqStart | Biobase.BLAST.Types, Biobase.BLAST |
| hit_from | Biobase.BLAST.Types, Biobase.BLAST |
| hit_strand | Biobase.BLAST.Types, Biobase.BLAST |
| hit_to | Biobase.BLAST.Types, Biobase.BLAST |
| hseq | Biobase.BLAST.Types, Biobase.BLAST |
| Hsp | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| hsps | Biobase.BLAST.Types, Biobase.BLAST |
| hsp_len | Biobase.BLAST.Types, Biobase.BLAST |
| hsp_num | Biobase.BLAST.Types, Biobase.BLAST |
| id | Biobase.BLAST.Types, Biobase.BLAST |
| identity | Biobase.BLAST.Types, Biobase.BLAST |
| jsonLower | Biobase.BLAST.Types, Biobase.BLAST |
| kappa | Biobase.BLAST.Types, Biobase.BLAST |
| lambda | Biobase.BLAST.Types, Biobase.BLAST |
| len | Biobase.BLAST.Types, Biobase.BLAST |
| midline | Biobase.BLAST.Types, Biobase.BLAST |
| misMatches | Biobase.BLAST.Types, Biobase.BLAST |
| mkANuc3SubstMat | Biobase.SubstMatrix |
| mkProbabilityMatrix | Biobase.SubstMatrix |
| num | Biobase.BLAST.Types, Biobase.BLAST |
| Params | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| params | Biobase.BLAST.Types, Biobase.BLAST |
| parseJSONBlast | Biobase.BLAST.Import |
| parseTabularBlasts | Biobase.BLAST.Import |
| parseTabularHTTPBlasts | Biobase.BLAST.Import |
| program | Biobase.BLAST.Types, Biobase.BLAST |
| qseq | Biobase.BLAST.Types, Biobase.BLAST |
| queryEnd | Biobase.BLAST.Types, Biobase.BLAST |
| queryId | Biobase.BLAST.Types, Biobase.BLAST |
| querySeq | Biobase.BLAST.Types, Biobase.BLAST |
| queryStart | Biobase.BLAST.Types, Biobase.BLAST |
| query_from | Biobase.BLAST.Types, Biobase.BLAST |
| query_id | Biobase.BLAST.Types, Biobase.BLAST |
| query_len | Biobase.BLAST.Types, Biobase.BLAST |
| query_strand | Biobase.BLAST.Types, Biobase.BLAST |
| query_title | Biobase.BLAST.Types, Biobase.BLAST |
| query_to | Biobase.BLAST.Types, Biobase.BLAST |
| recommendByQueryLength | Biobase.SubstMatrix.Hints |
| reference | Biobase.BLAST.Types, Biobase.BLAST |
| report | Biobase.BLAST.Types, Biobase.BLAST |
| results | Biobase.BLAST.Types, Biobase.BLAST |
| score | Biobase.BLAST.Types, Biobase.BLAST |
| sc_match | Biobase.BLAST.Types, Biobase.BLAST |
| sc_mismatch | Biobase.BLAST.Types, Biobase.BLAST |
| Search | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| search | Biobase.BLAST.Types, Biobase.BLAST |
| SearchStat | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| SearchTarget | |
| 1 (Type/Class) | Biobase.BLAST.Types, Biobase.BLAST |
| 2 (Data Constructor) | Biobase.BLAST.Types, Biobase.BLAST |
| search_target | Biobase.BLAST.Types, Biobase.BLAST |
| seqIdentity | Biobase.BLAST.Types, Biobase.BLAST |
| Similarity | Biobase.SubstMatrix.Types |
| stat | Biobase.BLAST.Types, Biobase.BLAST |
| subjectFrame | Biobase.BLAST.Types, Biobase.BLAST |
| subjectId | Biobase.BLAST.Types, Biobase.BLAST |
| subjectSeq | Biobase.BLAST.Types, Biobase.BLAST |
| SubstBLOSUM | Biobase.SubstMatrix.Types |
| SubstPAM | Biobase.SubstMatrix.Types |
| taxid | Biobase.BLAST.Types, Biobase.BLAST |
| title | Biobase.BLAST.Types, Biobase.BLAST |
| version | Biobase.BLAST.Types, Biobase.BLAST |
| _aaSubstMat | Biobase.SubstMatrix.Types |
| _anuc1SubstMat | Biobase.SubstMatrix.Types |
| _anuc2SubstMat | Biobase.SubstMatrix.Types |
| _anuc3SubstMat | Biobase.SubstMatrix.Types |