varan: Process mpileup output to identify significant differences
Post-processing output from `samtools mpileup` to extract various information, including statistics (per-position or global), consensus sequence (in various formats), and textual visualizations.
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- varan-0.5.1.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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| Versions [RSS] | 0.3, 0.5, 0.5.1 |
|---|---|
| Dependencies | ansi-terminal, base (>=4 && <5), bytestring, cmdargs, mtl, parallel, random, statistics [details] |
| License | LicenseRef-GPL |
| Author | Ketil Malde |
| Maintainer | Ketil Malde <ketil@malde.org> |
| Category | Bioinformatics |
| Uploaded | by KetilMalde at 2014-12-01T14:53:09Z |
| Distributions | |
| Reverse Dependencies | 1 direct, 0 indirect [details] |
| Executables | sparks, vextr, varan |
| Downloads | 2289 total (7 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
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| Status | Docs not available [build log] Last success reported on 2016-12-12 [all 6 reports] |