cabal-version: 1.12
name: slynx
version: 0.2.2
license: GPL-3
license-file: LICENSE
copyright: Dominik Schrempf (2020)
maintainer: dominik.schrempf@gmail.com
author: Dominik Schrempf
homepage: https://github.com/dschrempf/elynx#readme
bug-reports: https://github.com/dschrempf/elynx/issues
synopsis: Handle molecular sequences
description:
    Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on GitHub at <https://github.com/dschrempf/elynx>.
category: Bioinformatics
build-type: Simple
extra-source-files:
    README.md
    ChangeLog.md

source-repository head
    type: git
    location: https://github.com/dschrempf/elynx

library
    exposed-modules:
        SLynx.Concatenate.Concatenate
        SLynx.Concatenate.Options
        SLynx.Examine.Examine
        SLynx.Examine.Options
        SLynx.Filter.Filter
        SLynx.Filter.Options
        SLynx.Options
        SLynx.Simulate.Options
        SLynx.Simulate.PhyloModel
        SLynx.Simulate.Simulate
        SLynx.SLynx
        SLynx.SubSample.Options
        SLynx.SubSample.SubSample
        SLynx.Tools
        SLynx.Translate.Options
        SLynx.Translate.Translate
    hs-source-dirs: src
    other-modules:
        Paths_slynx
    default-language: Haskell2010
    ghc-options: -Wall -fllvm
    build-depends:
        async >=2.2.2 && <2.3,
        base >=4.13.0.0 && <4.14,
        bytestring >=0.10.10.0 && <0.11,
        containers >=0.6.2.1 && <0.7,
        elynx-markov >=0.2.2 && <0.3,
        elynx-seq >=0.2.1 && <0.3,
        elynx-tools >=0.2.2 && <0.3,
        elynx-tree >=0.2.2 && <0.3,
        hmatrix >=0.20.0.0 && <0.21,
        megaparsec >=8.0.0 && <8.1,
        monad-logger >=0.3.32 && <0.4,
        mwc-random >=0.14.0.0 && <0.15,
        optparse-applicative >=0.15.1.0 && <0.16,
        scientific >=0.3.6.2 && <0.4,
        text >=1.2.4.0 && <1.3,
        transformers >=0.5.6.2 && <0.6,
        vector >=0.12.1.2 && <0.13

executable slynx
    main-is: Main.hs
    hs-source-dirs: app
    other-modules:
        Paths_slynx
    default-language: Haskell2010
    ghc-options: -Wall -fllvm -threaded -rtsopts -with-rtsopts=-N
    build-depends:
        async >=2.2.2 && <2.3,
        base >=4.13.0.0 && <4.14,
        bytestring >=0.10.10.0 && <0.11,
        containers >=0.6.2.1 && <0.7,
        elynx-seq >=0.2.1 && <0.3,
        elynx-tools >=0.2.2 && <0.3,
        hmatrix >=0.20.0.0 && <0.21,
        megaparsec >=8.0.0 && <8.1,
        monad-logger >=0.3.32 && <0.4,
        mwc-random >=0.14.0.0 && <0.15,
        optparse-applicative >=0.15.1.0 && <0.16,
        scientific >=0.3.6.2 && <0.4,
        slynx -any,
        text >=1.2.4.0 && <1.3,
        transformers >=0.5.6.2 && <0.6,
        vector >=0.12.1.2 && <0.13