cabal-version: 1.12
name: slynx
version: 0.0.1
license: GPL-3
license-file: LICENSE
copyright: Dominik Schrempf (2019)
maintainer: dominik.schrempf@gmail.com
author: Dominik Schrempf
homepage: https://github.com/dschrempf/elynx#readme
bug-reports: https://github.com/dschrempf/elynx/issues
synopsis: Handle molecular sequences
description:
    Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on GitHub at <https://github.com/dschrempf/elynx>.
category: Bioinformatics
build-type: Simple
extra-source-files:
    README.md
    ChangeLog.md

source-repository head
    type: git
    location: https://github.com/dschrempf/elynx

library
    exposed-modules:
        Concatenate.Concatenate
        Concatenate.Options
        Examine.Examine
        Examine.Options
        Filter.Filter
        Filter.Options
        Simulate.Options
        Simulate.PhyloModel
        Simulate.Simulate
        SubSample.Options
        SubSample.SubSample
        Tools
        Translate.Options
        Translate.Translate
    hs-source-dirs: src
    other-modules:
        Paths_slynx
    default-language: Haskell2010
    ghc-options: -Wall
    build-depends:
        async >=2.2.2 && <2.3,
        base >=4.12.0.0 && <4.13,
        bytestring >=0.10.8.2 && <0.11,
        containers >=0.6.0.1 && <0.7,
        data-memocombinators >=0.5.1 && <0.6,
        elynx-seq >=0.0.1 && <0.1,
        elynx-tools >=0.0.1 && <0.1,
        elynx-tree >=0.0.1 && <0.1,
        hmatrix >=0.20.0.0 && <0.21,
        integration >=0.2.1 && <0.3,
        lens >=4.17.1 && <4.18,
        math-functions >=0.3.1.0 && <0.4,
        matrices >=0.5.0 && <0.6,
        megaparsec >=7.0.5 && <7.1,
        monad-logger >=0.3.30 && <0.4,
        mwc-random >=0.14.0.0 && <0.15,
        optparse-applicative >=0.14.3.0 && <0.15,
        parallel >=3.2.2.0 && <3.3,
        primitive >=0.6.4.0 && <0.7,
        statistics >=0.15.0.0 && <0.16,
        text >=1.2.3.1 && <1.3,
        transformers >=0.5.6.2 && <0.6,
        vector >=0.12.0.3 && <0.13,
        vector-th-unbox >=0.2.1.6 && <0.3,
        word8 >=0.1.3 && <0.2

executable slynx
    main-is: Main.hs
    hs-source-dirs: app
    other-modules:
        Options
        Paths_slynx
    default-language: Haskell2010
    ghc-options: -Wall -eventlog -threaded -rtsopts -with-rtsopts=-N
    build-depends:
        async >=2.2.2 && <2.3,
        base >=4.12.0.0 && <4.13,
        bytestring >=0.10.8.2 && <0.11,
        containers >=0.6.0.1 && <0.7,
        data-memocombinators >=0.5.1 && <0.6,
        elynx-seq >=0.0.1 && <0.1,
        elynx-tools >=0.0.1 && <0.1,
        hmatrix >=0.20.0.0 && <0.21,
        integration >=0.2.1 && <0.3,
        lens >=4.17.1 && <4.18,
        math-functions >=0.3.1.0 && <0.4,
        matrices >=0.5.0 && <0.6,
        megaparsec >=7.0.5 && <7.1,
        monad-logger >=0.3.30 && <0.4,
        mwc-random >=0.14.0.0 && <0.15,
        optparse-applicative >=0.14.3.0 && <0.15,
        parallel >=3.2.2.0 && <3.3,
        primitive >=0.6.4.0 && <0.7,
        slynx -any,
        statistics >=0.15.0.0 && <0.16,
        text >=1.2.3.1 && <1.3,
        transformers >=0.5.6.2 && <0.6,
        vector >=0.12.0.3 && <0.13,
        vector-th-unbox >=0.2.1.6 && <0.3,
        word8 >=0.1.3 && <0.2