{-# LANGUAGE ExtendedDefaultRules #-} ----------------------------------------------------------------------------- -- | -- Matplotlib bindings and an interface to easily bind to new portions of the -- API. The most essential parts of Matplotlib are wrapped and exposed to -- Haskell through an interface that allows extenisbility. Code is generated on -- the fly and python is called. -- -- This is not a very Haskell-ish library. Type safety is non-existent, it's -- easy to generate incorrect Python code, in exchange for being able to bind to -- arbitrary matplotlib APIs with ease, so it's also easy to generate correct -- python code. -- -- The generated code follows a few simple conventions. data is always loaded -- into a data variable that is a python array. Data is transffered via -- json. This data variable is indexed by various rendering commands. -- -- Functions which start with the word data operate on the data array, arguments -- are python code that should access that array. Most other functions take -- haskell objects and load them into python. -- -- This module should expose enough tools so that you can bind any part of the -- matplotlib API. A binding with options, such as that of 'plot', looks like: -- -- @ -- readData (x, y) -- % mp \# "p = plot.plot(data[" \# a \# "], data[" \# b \# "]" ## ")" -- % mp \# "plot.xlabel(" \# str label \# ")" -- @ -- -- Where important functions are: -- -- [@'readData'@] Load the given data into the python data array by serializing it to JSON. -- [@'%'@] Sequence two plots -- [@'mp'@] Create an empty plot -- [@'#'@] Append python code to the last command in a plot -- [@'##'@] Just like '#' but also adds in a placeholder for an options list -- -- You can call this plot with -- -- > plot [1,2,3,4,5,6] [1,3,2,5,2] @@ [o1 "go-", o2 "linewidth" 2] -- -- where '@@' applies an options list replacing the last '##' -- -- [@'o1'@] A single positional option. The value is rendered into python as -- the appropriate datatype. Strings become python strings, bools become bools, -- etc. If you want to insert code verbatim into an option use 'lit'. If you -- want to have a raw string with no escapes use 'raw'. -- [@'o2'@] A keyword option. The key is always a string, the value is treated -- the same way that the option in 'o1' is treated. -- -- Right now there's no easy way to bind to an option other than the last one -- unless you want to pass options in as parameters. -- -- The generated Python code should follow some invariants. It must maintain the -- current figure in "fig", all available axes in "axes", and the current axis -- in "ax". Plotting commands should use the current axis, never the plot -- itself; the two APIs are almost identical. When creating low-level bindings -- one must remember to call "plot.sci" to set the current image when plotting a -- graph. The current spine of the axes that's being manipulated is in -- "spine". The current quiver is in "q" ----------------------------------------------------------------------------- module Graphics.Matplotlib ( module Graphics.Matplotlib -- * Creating custom plots and applying options , Matplotlib(), Option(),(@@), (%), o1, o2, (##), (#), mp, def, readData, readImage , str, raw, lit, updateAxes, updateFigure, mapLinear) where import Data.List import Data.Aeson import Graphics.Matplotlib.Internal import Control.Concurrent(forkIO) -- * Running a plot -- | Show a plot, blocks until the figure is closed onscreen :: Matplotlib -> IO () onscreen m = (forkIO $ (withMplot m (\s -> python $ pyIncludes "" ++ s ++ pyOnscreen) >> return ())) >> return () -- | Print the python code that would be executed code :: Matplotlib -> IO String code m = withMplot m (\s -> return $ unlines $ pyIncludes (pyBackend "agg") ++ s ++ pyOnscreen) -- | Save to a file file :: [Char] -> Matplotlib -> IO (Either String String) file filename m = withMplot m (\s -> python $ pyIncludes (pyBackend "agg") ++ s ++ pyFigure filename) -- | Get the SVG for a figure toSvg :: Matplotlib -> IO (Either String String) toSvg m = withMplot m (\s -> python $ pyIncludes "" ++ s ++ pySVG) -- * Useful plots -- | Plot the cross-correlation and autocorrelation of several variables. TODO Due to -- a limitation in the options mechanism this takes explicit options. xacorr xs ys opts = readData (xs, ys) % figure % addSubplot 2 1 1 % xcorr xs ys @@ opts % grid True % axhline 0 @@ [o1 0, o2 "color" "black", o2 "lw" 2] % addSubplot 2 1 2 @@ [o2 "sharex" $ lit "ax"] % acorr xs @@ opts % grid True % axhline 0 @@ [o2 "color" "black", o2 "lw" 2] -- | Plot a histogram for the given values with 'bins' histogram :: (MplotValue val, ToJSON t) => t -> val -> Matplotlib histogram values bins = readData [values] % dataHistogram 0 bins -- | Plot a 2D histogram for the given values with 'bins' histogram2D x y = readData [x,y] % mp # "plot.sci(ax.hist2d(data[0], data[1]" ## ")[-1])" -- | Plot the given values as a scatter plot scatter :: (ToJSON t1, ToJSON t) => t1 -> t -> Matplotlib scatter x y = readData (x, y) % mp # "plot.sci(ax.scatter(data[0], data[1]" ## "))" -- | Create a bar at a position with a height bar :: (ToJSON t1, ToJSON t) => t1 -> t -> Matplotlib bar left height = readData (left, height) % mp # "ax.bar(data[0], data[1]" ## ")" -- | Plot a line line :: (ToJSON t1, ToJSON t) => t1 -> t -> Matplotlib line x y = plot x y `def` [o1 "-"] -- | Like 'plot' but takes an error bar value per point -- errorbar :: (ToJSON x, ToJSON y, ToJSON xs, ToJSON ys) => x -> y -> Maybe xs -> Maybe ys -> Matplotlib errorbar xs ys xerrs yerrs = readData (xs, ys, xerrs, yerrs) % mp # "ax.errorbar(data[0], data[1], xerr=data[2], yerr=data[3]" ## ")" -- | Plot a line given a function that will be executed for each element of -- given list. The list provides the x values, the function the y values. lineF :: (ToJSON a, ToJSON b) => (a -> b) -> [a] -> Matplotlib lineF f l = plot l (map f l) `def` [o1 "-"] -- | Create a box plot for the given data boxplot d = readData d % mp # "ax.boxplot(data" ## ")" -- | Create a violin plot for the given data violinplot d = readData d % mp # "ax.violinplot(data" ## ")" -- | Given a grid of x and y values and a number of steps call the given -- function and plot the 3D contour contourF :: (ToJSON val, MplotValue val, Ord val) => (Double -> Double -> val) -> Double -> Double -> Double -> Double -> Double -> Matplotlib contourF f xStart xEnd yStart yEnd steps = contour xs ys zs where xs = mapLinear (\x -> (mapLinear (\_ -> x) yStart yEnd steps)) xStart xEnd steps ys = mapLinear (\_ -> (mapLinear (\y -> y) yStart yEnd steps)) xStart xEnd steps zs = mapLinear (\x -> (mapLinear (\y -> f x y) yStart yEnd steps)) xStart xEnd steps -- | Given a grid of x and y values and a number of steps call the given -- function and plot the 3D projection projectionsF :: (ToJSON val, MplotValue val, Ord val) => (Double -> Double -> val) -> Double -> Double -> Double -> Double -> Double -> Matplotlib projectionsF f xStart xEnd yStart yEnd steps = projections xs ys zs where xs = mapLinear (\x -> (mapLinear (\_ -> x) yStart yEnd steps)) xStart xEnd steps ys = mapLinear (\_ -> (mapLinear (\y -> y) yStart yEnd steps)) xStart xEnd steps zs = mapLinear (\x -> (mapLinear (\y -> f x y) yStart yEnd steps)) xStart xEnd steps -- | Plot x against y interpolating with n steps plotInterpolated :: (MplotValue val, ToJSON t, ToJSON t1) => t1 -> t -> val -> Matplotlib plotInterpolated x y n = readData (x, y) % interpolate 0 1 n % dataPlot 0 1 `def` [o1 "-"] -- | A handy function to plot a line between two points give a function and a number o steps plotMapLinear :: ToJSON b => (Double -> b) -> Double -> Double -> Double -> Matplotlib plotMapLinear f s e n = line xs ys where xs = mapLinear (\x -> x) s e n ys = mapLinear (\x -> f x) s e n -- | Plot a line between 0 and the length of the array with the given y values line1 :: (Foldable t, ToJSON (t a)) => t a -> Matplotlib line1 y = line [0..length y] y -- | Plot a matrix matShow :: ToJSON a => a -> Matplotlib matShow d = readData d % (mp # "plot.sci(ax.matshow(data" ## "))") -- | Plot an image imshow :: MplotImage a => a -> Matplotlib imshow i = readImage i % (mp # "plot.sci(ax.imshow(img" ## "))") -- | Plot a matrix pcolor :: ToJSON a => a -> Matplotlib pcolor d = readData d % (mp # "plot.sci(ax.pcolor(np.array(data)" ## "))") -- | Plot a matrix pcolor3 x y z = readData (x,y,z) % (mp # "plot.sci(ax.pcolor(np.array(data[0]),np.array(data[1]),np.array(data[2])" ## "))") -- | Create a non-uniform image from samples nonUniformImage x y z = readData (x,y,z) % mp # "im = mpimg.NonUniformImage(ax" ## ")" % mp # "im.set_data(data[0], data[1], data[2])" -- | Create a pie chart pie l = readData l % mp # "plot.pie(" # l ## ")" -- | Plot a KDE of the given functions; a good bandwith will be chosen automatically density :: [Double] -> Maybe (Double, Double) -> Matplotlib density l maybeStartEnd = densityBandwidth l (((4 * (variance ** 5)) / (fromIntegral $ 3 * length l)) ** (1 / 5) / 3) maybeStartEnd where mean = foldl' (+) 0 l / (fromIntegral $ length l) variance = foldl' (+) 0 (map (\x -> sqr (x - mean)) l) / (fromIntegral $ length l) sqr x = x * x -- * Matplotlib configuration -- | Set an rc parameter rc s = mp # "plot.rc(" # str s ## ")" -- | Set an rcParams key-value setParameter k v = mp # "matplotlib.rcParams["# str k #"] = " # v -- | Enable or disable TeX setTeX :: Bool -> Matplotlib setTeX b = mp # "plot.rc('text', usetex="# b #")" -- * Basic plotting commands -- | Plot the 'a' and 'b' entries of the data object dataPlot :: (MplotValue val, MplotValue val1) => val1 -> val -> Matplotlib dataPlot a b = mp # "p = ax.plot(data[" # a # "], data[" # b # "]" ## ")" -- | Plot the Haskell objects 'x' and 'y' as a line plot :: (ToJSON t, ToJSON t1) => t1 -> t -> Matplotlib plot x y = readData (x, y) % dataPlot 0 1 streamplot x y u v = readData (x, y, u, v) % mp # "ax.streamplot(np.asarray(data[0]), np.asarray(data[1]), np.asarray(data[2]), np.asarray(data[3])" ## ")" -- | Plot x against y where x is a date. -- xunit is something like 'weeks', yearStart, monthStart, dayStart are an offset to x. -- TODO This isn't general enough; it's missing some settings about the format. The call is also a mess. dateLine :: (ToJSON t1, ToJSON t2) => t1 -> t2 -> String -> (Int, Int, Int) -> Matplotlib dateLine x y xunit (yearStart, monthStart, dayStart) = readData (x, y) % mp # "data[0] = [datetime.timedelta("#xunit#"=i) + datetime.datetime("#yearStart#","#monthStart#","#dayStart#") for i in data[0]]" % dataPlot 0 1 `def` [o1 "-"] % mp # "ax.xaxis.set_major_formatter(DateFormatter('%B'))" % mp # "ax.xaxis.set_minor_locator(WeekdayLocator(byweekday=6))" -- | Create a histogram for the 'a' entry of the data array dataHistogram :: (MplotValue val1, MplotValue val) => val1 -> val -> Matplotlib dataHistogram a bins = mp # "ax.hist(data[" # a # "]," # bins ## ")" -- | Create a scatter plot accessing the given fields of the data array dataScatter :: (MplotValue val1, MplotValue val) => val1 -> val -> Matplotlib dataScatter a b = dataPlot a b `def` [o1 "."] -- | Create a line accessing the given entires of the data array dataLine :: (MplotValue val1, MplotValue val) => val1 -> val -> Matplotlib dataLine a b = dataPlot a b `def` [o1 "-"] -- | Create a 3D contour contour xs ys zs = readData (xs, ys, zs) % axis3DProjection % surface 0 1 2 % contourRaw 0 1 2 (maximum2 xs) (maximum2 ys) (minimum2 zs) % axis3DLabels xs ys zs -- | Create a 3D projection projections xs ys zs = readData (xs, ys, zs) % axis3DProjection % contourRaw 0 1 2 (maximum2 xs) (maximum2 ys) (minimum2 zs) % axis3DLabels xs ys zs -- | Plot a 3D wireframe accessing the given elements of the data array wireframe :: (MplotValue val2, MplotValue val1, MplotValue val) => val2 -> val1 -> val -> Matplotlib wireframe a b c = mp # "ax.plot_wireframe(np.array(data[" # a # "]), np.array(data[" # b # "]), np.array(data[" # c # "]), rstride=1, cstride=1)" -- | Plot a 3D surface accessing the given elements of the data array surface :: (MplotValue val2, MplotValue val1, MplotValue val) => val2 -> val1 -> val -> Matplotlib surface a b c = mp # "ax.plot_surface(np.array(data[" # a # "]), np.array(data[" # b # "]), np.array(data[" # c # "]), rstride=1, cstride=1, cmap=cm.Blues, alpha=0.3)" -- | Plot a contour accessing the given elements of the data array contourRaw :: (MplotValue val1, MplotValue val2, MplotValue val5, MplotValue val4, MplotValue val3, MplotValue val) => val5 -> val4 -> val3 -> val2 -> val1 -> val -> Matplotlib contourRaw a b c maxA maxB minC = mp # "ax.contour(data[" # a # "], data[" # b # "], data[" # c # "], zdir='z', offset=" # minC # ")" % mp # "ax.contour(data[" # a # "], data[" # b # "], data[" # c # "], zdir='x', offset=-" # maxA # ")" % mp # "ax.contour(data[" # a # "], data[" # b # "], data[" # c # "], zdir='y', offset=" # maxB #")" -- | Draw a bag graph in a subplot -- TODO Why do we need this? subplotDataBar a width offset opts = mp # "ax.bar(np.arange(len(data[" # a # "]))+" # offset # ", data[" # a # "], " # width ## ")" @@ opts -- | The default bar with barDefaultWidth nr = 1.0 / (fromIntegral nr + 1) -- | Create a set of labelled bars of a given height subplotBarsLabelled valuesList labels optsList = subplotBars valuesList optsList % axisXTickSpacing (length $ head $ valuesList) (1.0 - barDefaultWidth (length valuesList) / 2.0) % axisXTickLabels labels -- | Create a subplot and a set of labelled bars -- TODO This is a mess.. subplotBars valuesList optsList = readData valuesList % addSubplot 1 1 1 % (let width = barDefaultWidth (length valuesList) in foldl1 (%) (zipWith3 (\_ opts i -> subplotDataBar i width (width * i) opts) valuesList optsList [0..])) -- | Update the data array to linearly interpolate between array entries interpolate :: (MplotValue val, MplotValue val2, MplotValue val1) => val2 -> val1 -> val -> Matplotlib interpolate a b n = (mp # "data[" # b # "] = mlab.stineman_interp(np.linspace(data[" # a # "][0],data[" # a # "][-1]," # n # "),data[" # a # "],data[" # b # "],None)") % (mp # "data[" # a # "] = np.linspace(data[" # a # "][0],data[" # a # "][-1]," # n # ")") -- | Plot a KDE of the given functions with an optional start/end and a bandwidth h densityBandwidth :: [Double] -> Double -> Maybe (Double, Double) -> Matplotlib densityBandwidth l h maybeStartEnd = plotMapLinear f (case maybeStartEnd of Nothing -> minimum l (Just (start, _)) -> start) (case maybeStartEnd of Nothing -> maximum l (Just (_, end)) -> end) 100 where f x = sum (map (\xi -> gaussianPdf x xi h) l) / ((fromIntegral $ length l) * h) gaussianPdf x mu sigma = exp (- sqr (x - mu) / (2 * sigma)) / sqrt (2 * pi * sigma) sqr x = x * x -- | Plot cross-correlation xcorr x y = readData (x, y) % mp # "ax.xcorr(data[0], data[1]" ## ")" -- | Plot auto-correlation acorr x = readData x % mp # "ax.acorr(data" ## ")" -- | A quiver plot; color is optional and can be nothing quiver x y u v Nothing = readData(x,y,u,v) % mp # "q = ax.quiver(data[0], data[1], data[2], data[3]" ## ")" quiver x y u v (Just c) = readData(x,y,u,v,c) % mp # "q = ax.quiver(data[0], data[1], data[2], data[3], data[4]" ## ")" -- | A key of a given size with a label for a quiver plot quiverKey x y u label = mp # "ax.quiverkey(q, "#x#", "#y#", "#u#", "#label##")" -- | Plot text at a specified location text x y s = mp # "ax.text(" # x # "," # y # "," # raw s ## ")" -- | Add a text to a figure instead of a particular plot figText x y s = mp # "plot.figtext(" # x # "," # y # "," # raw s ## ")" -- | Add an annotation annotate s = mp # "ax.annotate(" # str s ## ")" -- * Layout, axes, and legends -- | Square up the aspect ratio of a plot. setAspect :: Matplotlib setAspect = mp # "ax.set_aspect(" ## ")" -- | Square up the aspect ratio of a plot. squareAxes :: Matplotlib squareAxes = mp # "ax.set_aspect('equal')" -- | Set the rotation of the labels on the x axis to the given number of degrees roateAxesLabels :: MplotValue val => val -> Matplotlib roateAxesLabels degrees = mp # "labels = ax.get_xticklabels()" % mp # "for label in labels:" % mp # " label.set_rotation("#degrees#")" -- | Set the x labels to be vertical verticalAxes :: Matplotlib verticalAxes = mp # "labels = ax.get_xticklabels()" % mp # "for label in labels:" % mp # " label.set_rotation('vertical')" -- | Set the x scale to be logarithmic logX :: Matplotlib logX = mp # "ax.set_xscale('log')" -- | Set the y scale to be logarithmic logY :: Matplotlib logY = mp # "ax.set_yscale('log')" -- | Set limits on the x axis xlim :: (MplotValue val1, MplotValue val) => val1 -> val -> Matplotlib xlim l u = mp # "ax.set_xlim(" # l # "," # u # ")" -- | Set limits on the y axis ylim :: (MplotValue val1, MplotValue val) => val1 -> val -> Matplotlib ylim l u = mp # "ax.set_ylim(" # l # "," # u # ")" -- | Add a horizontal line across the axis axhline y = mp # "ax.axhline(" # y ## ")" -- | Insert a legend legend = mp # "ax.legend(" ## ")" -- | Insert a color bar -- TODO This refers to the plot and not an axis. Might cause trouble with subplots colorbar = mp # "plot.colorbar(" ## ")" -- | Add a title title :: String -> Matplotlib title s = mp # "ax.set_title(" # raw s ## ")" -- | Show/hide grid lines grid :: Bool -> Matplotlib grid t = mp # "ax.grid(" # t # ")" -- | Enable 3D projection axis3DProjection :: Matplotlib axis3DProjection = mp # "ax = plot.gca() if plot.gca().name == '3d' else plot.subplot(projection='3d')" -- | Label and set limits of a set of 3D axis -- TODO This is a mess, does both more and less than it claims. axis3DLabels xs ys zs = mp # "ax.set_xlabel('X')" % mp # "ax.set_xlim3d(" # minimum2 xs # ", " # maximum2 xs # ")" % mp # "ax.set_ylabel('Y')" % mp # "ax.set_ylim3d(" # minimum2 ys # ", " # maximum2 ys # ")" % mp # "ax.set_zlabel('Z')" % mp # "ax.set_zlim3d(" # minimum2 zs # ", " # maximum2 zs # ")" -- | Add a label to the x axis xlabel :: String -> Matplotlib xlabel label = mp # "ax.set_xlabel(" # raw label ## ")" -- | Add a label to the y axis ylabel :: String -> Matplotlib ylabel label = mp # "ax.set_ylabel(" # raw label ## ")" -- | Add a label to the z axis zlabel :: String -> Matplotlib zlabel label = mp # "ax.set_zlabel(" # raw label ## ")" setSizeInches w h = mp # "fig.set_size_inches(" # w # "," # h # ", forward=True)" tightLayout = mp # "fig.tight_layout(" ## ")" xkcd = mp # "plot.xkcd()" -- * Ticks xticks l = mp # "ax.set_xticks(" # l # ")" yticks l = mp # "ax.set_yticks(" # l # ")" zticks l = mp # "ax.set_zticks(" # l # ")" xtickLabels l = mp # "ax.set_xticklabels(" # l # ")" ytickLabels l = mp # "ax.set_yticklabels(" # l # ")" ztickLabels l = mp # "ax.set_zticklabels(" # l # ")" -- | Set the spacing of ticks on the x axis axisXTickSpacing :: (MplotValue val1, MplotValue val) => val1 -> val -> Matplotlib axisXTickSpacing nr width = mp # "ax.set_xticks(np.arange(" # nr # ")+" # width ## ")" -- | Set the labels on the x axis axisXTickLabels :: MplotValue val => val -> Matplotlib axisXTickLabels labels = mp # "ax.set_xticklabels( (" # labels # ") " ## " )" -- | Set the spacing of ticks on the y axis axisYTickSpacing :: (MplotValue val1, MplotValue val) => val1 -> val -> Matplotlib axisYTickSpacing nr width = mp # "ax.set_yticks(np.arange(" # nr # ")+" # width ## ")" -- | Set the labels on the y axis axisYTickLabels :: MplotValue val => val -> Matplotlib axisYTickLabels labels = mp # "ax.set_yticklabels( (" # labels # ") " ## " )" axisXTicksPosition p = mp # "ax.xaxis.set_ticks_position('" # p # "')" axisYTicksPosition p = mp # "ax.yaxis.set_ticks_position('" # p # "')" -- * Spines spine s = mp # "spine = ax.spines['" # s # "']" spineSetBounds l h = mp # "spine.set_bounds(" # l # "," # h # ")" spineSetVisible b = mp # "spine.set_visible(" # b # ")" spineSetPosition s n = mp # "spine.set_position((" # s # "," # n # "))" -- * Subplots setAx = mp # "plot.sca(ax) " -- | Create a subplot with the coordinates (r,c,f) addSubplot r c f = mp # "ax = plot.gcf().add_subplot(" # r # c # f ## ")" % updateAxes % setAx -- | Access a subplot with the coordinates (r,c,f) getSubplot r c f = mp # "ax = plot.subplot(" # r # "," # c # "," # f ## ")" % updateAxes % setAx -- | Creates subplots and stores them in an internal variable subplots = mp # "fig, axes = plot.subplots(" ## ")" % mp # "axes = np.asarray(axes)" % mp # "axes = axes.flatten()" % updateAxes % setAx -- | Access a subplot setSubplot s = mp # "ax = axes[" # s # "]" % setAx -- | Add axes to a plot axes = mp # "ax = plot.axes(" ## ")" % updateAxes % setAx -- | Add axes to a figure addAxes = mp # "ax = fig.add_axes(" ## ")" % updateAxes % setAx -- | Creates a new figure with the given id. If the Id is already in use it -- switches to that figure. figure = mp # "plot.figure(" ## ")" % updateFigure